Query & search

This guide walks through querying & searching registries. To understand the links between objects that enable relational queries, see Organize datasets. To query datasets in storage, see Query tables in storage and Query arrays in storage .

Basics

Create a database object:

import lamindb as ln

db = ln.DB("laminlabs/lamindata")

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→ connected lamindb: anonymous/docs

• tip: to work with the additional module (pertdb) of database laminlabs/lamindata, configure your environment for it: lamin settings modules set bionty,pertdb

Get an overview

Return the most recent entries of the Artifact registry as a DataFrame:

db.Artifact.to_dataframe()

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! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
33167	6JZQcGHVVaYxKuUQ0000	probes/probe_artifact.csv	Small probe CSV dataset	.csv	dataset	DataFrame	61.0	vnX6jSSm-fztWG9KdnSCuw	None	3.0	...	True	False	2026-09-22 14:44:45.568391+00:00	1467	1467	1	2	15742	None	76
33164	o8EEIaeJfoaBwuwL0000	probes/child_probe_artifact.csv	Small CSV artifact created by child probe script	.csv	dataset	DataFrame	59.0	oOxjLVm2AZnE119_glMGaQ	None	3.0	...	True	False	2026-09-22 14:33:58.178578+00:00	1466	1466	1	2	15740	None	76
32405	G01bYTnXtheyHn6d0000	clinical/fictional_patient_treatment_summary.csv	Summary statistics of fictional patient record...	.csv	dataset	DataFrame	295.0	kNZ4RfZdoiUSCyCTLAZ6Mg	None	2.0	...	True	False	2026-09-15 08:56:24.179384+00:00	1220	1220	1	2	15145	None	76
32404	40B9zKPoTb0BDOut0000	clinical/fictional_patient_records.csv	50 reproducible fictional patient records with...	.csv	dataset	DataFrame	1327.0	4vkKI7HE0q6zOCXoK3HvDw	None	50.0	...	True	False	2026-09-15 08:56:17.794657+00:00	1220	1220	1	2	15145	None	76
32402	QLta8LlkQ2MZzLWf0000	enzyme-kinetics/michaelis_menten_velocities.csv	Simulated Michaelis–Menten reaction velocities...	.csv	dataset	DataFrame	1423.0	U3bADqhnwwvj0kZhx9RQQw	None	20.0	...	True	False	2026-09-15 08:56:14.912028+00:00	1220	1220	1	2	15144	None	76
32370	ThfkwZ82gTSkCfaJ0000	proteins/human_insulin_b_chain_aa_composition.csv	Amino-acid composition of the human insulin B-...	.csv	dataset	DataFrame	402.0	4AFoDfSYzAljDfRPIqXMqg	None	16.0	...	True	False	2026-09-15 07:54:32.343772+00:00	1220	1220	1	2	15119	None	76
32312	Zd3fI2S5c38M14HH0000	proteins/human_insulin_b_chain.fasta	Human insulin B-chain amino-acid sequence in F...	.fasta	NaN	NaN	68.0	gJBJWTj85Lpe3CIF1PbQnA	None	NaN	...	True	False	2026-09-14 14:00:09.229742+00:00	1208	1208	1	2	15068	None	76
32309	KluzQbOolGiOtUDR0000	proteins/human_hemoglobin_beta_amino_acid_comp...	Amino-acid composition of human hemoglobin beta	.csv	dataset	DataFrame	540.0	92zmUgeZhSYC9X-TcdUxvg	None	20.0	...	True	False	2026-09-14 13:50:13.115164+00:00	1204	1204	1	2	15066	None	76
32293	cMQ69rtol53tPidM0000	proteins/human_insulin_amino_acid_composition.csv	Amino-acid composition of human insulin	.csv	dataset	DataFrame	505.0	RxLbYE6_H8oANuUYxHq4CQ	None	20.0	...	True	False	2026-09-14 13:20:25.114528+00:00	1193	1193	1	2	15054	None	76
31662	Bhh82ZsCzzgjKcLc0000	fasta/human_glucagon_aa_composition.csv	Amino-acid composition (counts and fractions) ...	.csv	dataset	DataFrame	457.0	EVXmhMG310d_a6FbyuhCtQ	None	16.0	...	True	False	2026-09-10 19:33:01.337153+00:00	1014	1014	1	2	14562	None	76
31658	5AKaBSsO7uiI9YLD0000	fasta/human_glucagon.fasta	Human glucagon (UniProt P01275) protein sequen...	.fasta	NaN	NaN	61.0	Cq2HZTTXfHDOmUYg5KF6hQ	None	NaN	...	True	False	2026-09-10 19:24:35.209750+00:00	1014	1014	1	2	14559	None	76
31651	EVQ4GHXdWyOuvFxB0000	fasta/human_insulin_b_chain.fasta	Human insulin B-chain sequence (UniProt P01308)	.fasta	NaN	NaN	68.0	ixJED8V7zgF3sb9spUNe1g	None	NaN	...	True	False	2026-09-10 18:55:10.083392+00:00	1013	1013	1	2	14554	None	76
31634	MKUstTC3MvylENNs0002	fasta/protein.fasta	Small FASTA file containing the human insulin ...	.fasta	NaN	NaN	66.0	VbBXwriFzoqK0B5qZy-2lw	None	NaN	...	True	False	2026-09-10 14:55:41.516858+00:00	1004	1004	1	2	14542	None	76
31441	N2N25ecPjU1uhIRN0000	fasta/cytochrome_c_human_aa_frequencies.parquet	Amino-acid composition analysis of human cytoc...	.parquet	dataset	DataFrame	2946.0	arOXbnDIa8lATHRFYegTfQ	None	20.0	...	True	False	2026-09-08 22:10:17.518495+00:00	1	1	1	2	14388	None	76
31438	x7gkzDW9dDIXjMgF0000	fasta/cytochrome_c_human.fasta	Human cytochrome c (CYCS, UniProt P99999) prot...	.fasta	NaN	NaN	183.0	6rYbxRvZr5LftJaBZ3Ltaw	None	NaN	...	True	False	2026-09-08 22:08:58.275001+00:00	1	1	1	2	14387	None	76
31435	tna1ksLbhUUZCiNz0000	fasta/myoglobin_human.fasta	Human myoglobin (UniProt P02144) protein seque...	.fasta	NaN	NaN	228.0	zsyBEtGSPvAfNyBBm4pNGg	None	NaN	...	True	False	2026-09-08 22:03:16.717387+00:00	971	971	1	2	14385	None	76
31433	fUvBvCy30c1kU7WL0000	fasta/hemoglobin_beta_composition.json	Sequence length and amino-acid composition of ...	.json	NaN	NaN	295.0	OCWUFB7v0hgnJ4Lg_T32lQ	None	NaN	...	True	False	2026-09-08 21:38:43.107004+00:00	971	971	1	2	14383	None	76
31430	xS7uxgbJ3ktfyjWG0000	fasta/hemoglobin_beta.fasta	Human hemoglobin subunit beta (HBB, UniProt P6...	.fasta	NaN	NaN	236.0	yU8iOxOXnun5htqDB8lxYA	None	NaN	...	True	False	2026-09-08 21:37:16.475631+00:00	971	971	1	2	14382	None	76
31415	W3q98o3Rxv5wxiS40000	NaN	mix-test	.txt	NaN	NaN	62.0	xMtGxadDGhAvlDQKmNJ_ZA	None	NaN	...	True	False	2026-09-08 20:30:51.088739+00:00	1	1	1	2	NaN	None	3
31414	Uu0CthUXD2BP4MMr0000	NaN	upload2	.txt	NaN	NaN	54.0	wzKrXgQvmWqiM4yGu9uEOA	None	NaN	...	True	False	2026-09-08 20:23:51.195724+00:00	1	1	1	2	NaN	None	3

20 rows × 22 columns

Include fields from other registries with the __ syntax:

db.Artifact.to_dataframe(include=["created_by__handle"])

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! truncated query result to limit=20 Artifact objects

	uid	key	created_by__handle
id
33167	6JZQcGHVVaYxKuUQ0000	probes/probe_artifact.csv	ebad
33164	o8EEIaeJfoaBwuwL0000	probes/child_probe_artifact.csv	ebad
32405	G01bYTnXtheyHn6d0000	clinical/fictional_patient_treatment_summary.csv	ebad
32404	40B9zKPoTb0BDOut0000	clinical/fictional_patient_records.csv	ebad
32402	QLta8LlkQ2MZzLWf0000	enzyme-kinetics/michaelis_menten_velocities.csv	ebad
32370	ThfkwZ82gTSkCfaJ0000	proteins/human_insulin_b_chain_aa_composition.csv	ebad
32312	Zd3fI2S5c38M14HH0000	proteins/human_insulin_b_chain.fasta	ebad
32309	KluzQbOolGiOtUDR0000	proteins/human_hemoglobin_beta_amino_acid_comp...	ebad
32293	cMQ69rtol53tPidM0000	proteins/human_insulin_amino_acid_composition.csv	ebad
31662	Bhh82ZsCzzgjKcLc0000	fasta/human_glucagon_aa_composition.csv	ebad
31658	5AKaBSsO7uiI9YLD0000	fasta/human_glucagon.fasta	ebad
31651	EVQ4GHXdWyOuvFxB0000	fasta/human_insulin_b_chain.fasta	ebad
31634	MKUstTC3MvylENNs0002	fasta/protein.fasta	ebad
31441	N2N25ecPjU1uhIRN0000	fasta/cytochrome_c_human_aa_frequencies.parquet	ebad
31438	x7gkzDW9dDIXjMgF0000	fasta/cytochrome_c_human.fasta	ebad
31435	tna1ksLbhUUZCiNz0000	fasta/myoglobin_human.fasta	ebad
31433	fUvBvCy30c1kU7WL0000	fasta/hemoglobin_beta_composition.json	ebad
31430	xS7uxgbJ3ktfyjWG0000	fasta/hemoglobin_beta.fasta	ebad
31415	W3q98o3Rxv5wxiS40000	NaN	Koncopd
31414	Uu0CthUXD2BP4MMr0000	NaN	Koncopd

Get an overview of all most recent objects in the database:

db.view()

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****************

* module: core *

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Artifact

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
33167	6JZQcGHVVaYxKuUQ0000	probes/probe_artifact.csv	Small probe CSV dataset	.csv	dataset	DataFrame	61.0	vnX6jSSm-fztWG9KdnSCuw	None	3.0	...	True	False	2026-09-22 14:44:45.568391+00:00	1467	1467	1	2	15742	None	76
33164	o8EEIaeJfoaBwuwL0000	probes/child_probe_artifact.csv	Small CSV artifact created by child probe script	.csv	dataset	DataFrame	59.0	oOxjLVm2AZnE119_glMGaQ	None	3.0	...	True	False	2026-09-22 14:33:58.178578+00:00	1466	1466	1	2	15740	None	76
32405	G01bYTnXtheyHn6d0000	clinical/fictional_patient_treatment_summary.csv	Summary statistics of fictional patient record...	.csv	dataset	DataFrame	295.0	kNZ4RfZdoiUSCyCTLAZ6Mg	None	2.0	...	True	False	2026-09-15 08:56:24.179384+00:00	1220	1220	1	2	15145	None	76
32404	40B9zKPoTb0BDOut0000	clinical/fictional_patient_records.csv	50 reproducible fictional patient records with...	.csv	dataset	DataFrame	1327.0	4vkKI7HE0q6zOCXoK3HvDw	None	50.0	...	True	False	2026-09-15 08:56:17.794657+00:00	1220	1220	1	2	15145	None	76
32402	QLta8LlkQ2MZzLWf0000	enzyme-kinetics/michaelis_menten_velocities.csv	Simulated Michaelis–Menten reaction velocities...	.csv	dataset	DataFrame	1423.0	U3bADqhnwwvj0kZhx9RQQw	None	20.0	...	True	False	2026-09-15 08:56:14.912028+00:00	1220	1220	1	2	15144	None	76
32370	ThfkwZ82gTSkCfaJ0000	proteins/human_insulin_b_chain_aa_composition.csv	Amino-acid composition of the human insulin B-...	.csv	dataset	DataFrame	402.0	4AFoDfSYzAljDfRPIqXMqg	None	16.0	...	True	False	2026-09-15 07:54:32.343772+00:00	1220	1220	1	2	15119	None	76
32312	Zd3fI2S5c38M14HH0000	proteins/human_insulin_b_chain.fasta	Human insulin B-chain amino-acid sequence in F...	.fasta	NaN	NaN	68.0	gJBJWTj85Lpe3CIF1PbQnA	None	NaN	...	True	False	2026-09-14 14:00:09.229742+00:00	1208	1208	1	2	15068	None	76

7 rows × 22 columns

Collection

	uid	key	description	hash	reference	reference_type	version_tag	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	schema_id	meta_artifact_id
id
55	cqukvOra6GNNB71W0Llw	collection-with-schema	Empty collection with a direct schema relation...	NaN	None	None	None	True	False	2026-07-29 22:29:08.441329+00:00	1	1	1	20	NaN	229	None
53	br3wYkh6hnAvlLdo0000	csv_uploads_collection	A collection of uploaded CSV samples	zvW2xO8dU8whNb6COP34Qw	None	None	None	True	False	2026-07-09 14:39:05.994080+00:00	3	3	1	46	NaN	NaN	None
52	okxPW6GIKBfRBE3B0001	scrna/collection1	NaN	jKzNshNzE7IkXgRG17rj4A	None	None	None	True	False	2026-06-03 05:10:43.531698+00:00	1	1	1	60	NaN	NaN	None
51	DMF53hCJZQdnVIzT0000	View PAS OME-TIFF, Neumann et al., 2020 in Vit...	NaN	vpleElXxZiaZblQ09q9K-g	None	None	None	True	False	2026-01-28 23:40:21.984321+00:00	1	1	1	18	2250	NaN	None
50	H1AlT19wFq7HdHqZ0000	View Habib17 (h5ad) in Vitessce	NaN	hmrSAi0jDsrxvo9Oy3Hiqg	None	None	None	True	False	2026-01-20 20:28:39.313883+00:00	1	1	1	18	1934	NaN	None
49	p46U2L7tUlotAAkI0000	View Xenium_V1_humanLung_Cancer_FFPE_he_image ...	NaN	KuLnVec2HsgUIbl0fcTXdQ	None	None	None	True	False	2026-01-14 14:32:16.517376+00:00	1	1	1	40	NaN	NaN	None
46	mySQPfapuYs3ABLC0000	fasta-test-output-collection-2	NaN	QUraKB3k9PERvsRza4ycCQ	None	None	None	True	False	2025-11-30 22:35:25.029942+00:00	1	1	1	9	1591	NaN	None

Feature

	uid	name	_dtype_str	unit	description	array_rank	array_size	array_shape	synonyms	default_value	...	coerce	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	type_id
id
774	e9FQfTbe94WM	xferbench_note	str	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:52.715455+00:00	1	1	1	60	15215	None
773	p2S3xd6oFl8E	xferbench_date	date	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:52.143674+00:00	1	1	1	60	15215	None
772	I4EDx3reEbK6	xferbench_n_samples	int	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:51.562201+00:00	1	1	1	60	15215	None
771	ZP2RbbaxPmvJ	xferbench_treatment	str	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:51.105332+00:00	1	1	1	60	15215	None
770	JL7bN6sz9X50	xferbench_qc_status	cat[ULabel[suHk8o2k]]	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:50.480587+00:00	1	1	1	60	15215	None
769	FM3eaRqkFmrH	xferbench_samples	list[cat[Record[8kevjYnegidPu8P2]]]	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:50.027247+00:00	1	1	1	60	15215	None
768	kHUxs4a7qsHp	xferbench_treated	bool	None	None	0	0	None	None	None	...	None	False	False	2026-09-16 10:36:47.569334+00:00	1	1	1	60	15215	None

7 rows × 21 columns

Project

	uid	name	description	abbr	url	start_date	end_date	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	type_id
id
79	wPC2QrhipjSY	Space issue debugging	None	None	None	None	None	False	True	2026-08-06 10:57:15.128752+00:00	1	1	37	60	NaN	74
78	LGBhpB09J1b2	Space issue debugging	None	None	None	None	None	False	True	2026-08-06 09:47:20.412192+00:00	-1	1	37	60	12591	NaN
77	f71hDEwbOjqx	Space debugging	None	None	None	None	None	False	False	2026-08-06 09:45:28.864762+00:00	1	1	1	60	NaN	NaN
76	LtcVwm68sZo2	Space debugging test	None	None	None	None	None	False	True	2026-08-06 09:38:55.797287+00:00	-1	1	1	60	NaN	NaN
75	OU7MHu1D2q2s	Space debugging	None	None	None	None	None	False	True	2026-08-06 09:24:12.296292+00:00	1	1	37	60	NaN	74
74	KrzaeLA1wPV1	Program Type	None	None	None	None	None	False	True	2026-08-06 09:24:11.347019+00:00	1	1	1	60	NaN	NaN
73	dLGPJoG8TQhd	Space debugging	None	None	None	None	None	False	True	2026-08-06 09:18:32.052879+00:00	-1	1	1	60	NaN	NaN

Record

	uid	name	description	reference	reference_type	extra_data	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	type_id	schema_id	run_id
id
75026	wnb2mNHX9gTSTCHJ	None	None	None	None	None	False	False	2026-09-24 07:56:45.221928+00:00	1	1	1	18	2759	None	15869
75025	S8hcjjuGCVQJlzut	None	None	None	None	None	False	False	2026-09-24 07:56:32.377760+00:00	1	1	1	18	611	None	15868
75024	qg8B5KAegFKYiJxa	None	None	None	None	None	False	False	2026-09-24 07:56:19.811773+00:00	1	1	1	18	2319	None	15867
75023	RVXFWRFGcOBmF9jX	None	None	None	None	None	False	False	2026-09-23 10:32:45.805996+00:00	1	1	1	18	2759	None	15791
75022	Az5HphPI3uOQB36a	None	None	None	None	None	False	False	2026-09-23 10:32:34.259259+00:00	1	1	1	18	611	None	15790
75021	Ee1IQoAHDpqXgjpF	None	None	None	None	None	False	False	2026-09-23 10:32:23.087119+00:00	1	1	1	18	2319	None	15789
75020	vwO3zfnR1L5WZ5D8	None	None	None	None	None	False	False	2026-09-22 19:52:14.618507+00:00	1	1	1	18	2759	None	15759

Reference

	uid	name	description	abbr	url	pubmed_id	doi	text	date	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	type_id
id
5	WFauEWWBwslb	Nextflow enables reproducible computational wo...	Di Tommaso, P., Chatzou, M., Floden, E.W. et a...	NaN	https://doi.org/10.1038/nbt.3820	NaN	NaN	NaN	None	False	False	2026-07-09 14:41:07.854108+00:00	3	3	1	46	NaN	None
4	c0bTj3vLkGPA	CRISPR activation and interference screens dec...	NaN	Schmidt22	NaN	35113687.0	NaN	Regulation of cytokine production in stimulate...	None	False	False	2025-09-28 14:05:36.774006+00:00	1	1	1	9	840	None
3	v19l0ASlvdLj	SEA-AD: Seattle Alzheimer’s Disease Brain Cell...	The Seattle Alzheimer's Disease Brain Cell Atl...	NaN	https://cellxgene.cziscience.com/collections/1...	NaN	10.1038/s41593-024-01774-5	NaN	2022-05-31	False	False	2024-11-25 11:13:49.872888+00:00	1	1	1	30	501	None
2	XVqpeeo4rOGh	Spatially mapping T cell receptors and transcr...	This repository contains data from our manuscr...	NaN	https://cellxgene.cziscience.com/collections/0...	NaN	10.1016/j.immuni.2022.09.002	NaN	2023-09-29	False	False	2024-11-25 10:31:38.620076+00:00	1	1	1	30	501	None
1	1XqufHiwjUaq	Multiplexed single-cell transcriptional respon...	NaN	McFarland 2020	https://www.nature.com/articles/s41467-020-174...	NaN	10.1038/s41467-020-17440-w	Assays to study cancer cell responses to pharm...	None	False	False	2024-12-20 13:28:18.813382+00:00	1	1	1	2	NaN	None

Run

	uid	name	description	entrypoint	started_at	finished_at	params	extra_data	reference	reference_type	...	created_at	branch_id	created_on_id	space_id	transform_id	report_id	environment_id	plan_id	created_by_id	initiated_by_run_id
id
15889	6GigwRIo1stLLziT	None	None	NaN	2026-09-24 12:39:21.738503+00:00	NaT	None	None	None	None	...	2026-09-24 12:39:21.738503+00:00	1	1	1	1792	NaN	33356	None	9	None
15888	pUmSRAuOEIqCgrcO	None	None	check	2026-09-24 12:30:40.232753+00:00	2026-09-24 12:30:46.436682+00:00	{'no_run': False, 'repeats': 4, 'threshold': 1.5}	None	None	None	...	2026-09-24 12:30:40.232753+00:00	1	1	1	1413	33355	33352	None	18	None
15887	4oErpUfgrJTZHuog	None	None	check	2026-09-24 12:30:28.510749+00:00	2026-09-24 12:30:34.647643+00:00	{'no_run': False, 'repeats': 4, 'threshold': 1.5}	None	None	None	...	2026-09-24 12:30:28.510749+00:00	1	1	1	1413	33354	33352	None	18	None
15886	8AjhnBAE7gHOBD9x	None	None	check	2026-09-24 12:30:09.560887+00:00	2026-09-24 12:30:23.709921+00:00	{'no_run': False, 'repeats': 4, 'threshold': 3.5}	None	None	None	...	2026-09-24 12:30:09.560887+00:00	1	1	1	1413	33353	33352	None	18	None
15885	LOkT6Fc8RA9LyKiJ	None	None	check	2026-09-24 12:03:59.555135+00:00	2026-09-24 12:04:04.741734+00:00	{'no_run': False, 'repeats': 4, 'threshold': 1.5}	None	None	None	...	2026-09-24 12:03:59.555135+00:00	1	1	1	1413	33351	33348	None	18	None
15884	phIsmaxpxbIFgmxL	None	None	check	2026-09-24 12:03:50.431104+00:00	2026-09-24 12:03:55.482307+00:00	{'no_run': False, 'repeats': 4, 'threshold': 1.5}	None	None	None	...	2026-09-24 12:03:50.431104+00:00	1	1	1	1413	33350	33348	None	18	None
15883	Jc8JQHD0ZHQOfXvw	None	None	check	2026-09-24 12:03:35.927853+00:00	2026-09-24 12:03:46.809671+00:00	{'no_run': False, 'repeats': 4, 'threshold': 3.5}	None	None	None	...	2026-09-24 12:03:35.927853+00:00	1	1	1	1413	33349	33348	None	18	None

7 rows × 22 columns

Schema

	uid	name	description	n_members	coerce	flexible	itype	otype	suffix	hash	...	maximal_set	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	type_id
id
262	09pdMItyqpSpp2wn	xferbench_experiment_schema	None	6.0	None	False	Feature	None	None	upTQGp-oddPwUS38tj8nmw	...	False	False	False	2026-09-16 10:36:53.306152+00:00	1	1	1	60	15215	None
261	5Lhx12bUOi5OoWGP	xferbench_sample_schema	None	3.0	None	False	Feature	None	None	1w-XLSqJGsqLzTDVQiOEew	...	False	False	False	2026-09-16 10:36:48.141850+00:00	1	1	1	60	15215	None
260	U4Q6kRvkeHjPSVTo	xferbench_donor_schema	None	2.0	None	False	Feature	None	None	Blysp9VGabriCn73qWnvfQ	...	False	False	False	2026-09-16 10:36:44.374795+00:00	1	1	1	60	15215	None
259	hXyVCL89wsTtMjpg	nf-core/proteinfold input	None	2.0	True	False	Feature	None	None	2ulsT0d5w3hmBZcP_bs36w	...	False	False	False	2026-08-21 10:47:13.579757+00:00	1	1	1	2	NaN	None
258	3RpySfk5IOSZ5gv7	nf-core/methylseq input with sample link	None	4.0	True	False	Feature	None	None	RqFmVCqi7mXq7os5d0wOVQ	...	False	False	False	2026-08-21 10:47:11.899753+00:00	1	1	1	2	NaN	None
257	ta9tRj6ohahwD9Me	nf-core/crisprseq targeted input with sample link	None	6.0	True	False	Feature	None	None	NGdsJQUw9YMPeHYCwCyJhQ	...	False	False	False	2026-08-21 10:47:10.225990+00:00	1	1	1	2	NaN	None
256	Miam1meXOpW8GMAZ	nf-core/chipseq input with sample link	None	5.0	True	False	Feature	None	None	wwJM8x5vHyoL-0SW0TMw5A	...	False	False	False	2026-08-21 10:47:08.551482+00:00	1	1	1	2	NaN	None

7 rows × 22 columns

Storage

	uid	root	description	type	region	instance_uid	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id
id
65	I5vhvNJq9EJF	s3://lamin-us-east-1/I5vhvNJq9EJF	None	s3	us-east-1	4XIuR0tvaiXM	False	2026-08-06 07:27:27.965079+00:00	1	1	37	9	NaN
64	BN5hkmpQV3A5	s3://cellxgene-census-public-us-west-2	None	s3	us-west-2	NaN	False	2026-08-05 13:06:18.181461+00:00	1	1	1	60	12513
63	ytKACRVv0kZX	s3://ngi-igenomes	None	s3	eu-west-1	NaN	False	2026-07-23 07:40:47.354980+00:00	1	1	1	54	NaN
62	VHK54QHjGJwM	https://ftp.ensembl.org	None	https	NaN	NaN	False	2026-07-23 07:03:08.272550+00:00	1	1	1	54	NaN
61	pkcs4jm2RZI6	s3://nf-lamin-test/scratch	None	s3	us-east-1	7clAMMtTbqlK	False	2026-07-22 14:25:32.981609+00:00	1	1	1	54	NaN
60	oiIXpnEdjflJ	https://static-content.springer.com	None	https	NaN	NaN	False	2026-07-09 13:38:48.347870+00:00	1	1	1	18	NaN
59	xz61M0QVM1uI	s3://openproblems-data	None	s3	us-west-2	NaN	False	2026-05-21 08:57:21.367940+00:00	1	1	1	54	NaN

Transform

	uid	key	description	kind	source_code	hash	reference	reference_type	version_tag	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	environment_id	plan_id	run_id	created_by_id
id
1820	ybiORS7u2cyD0000	write_probe_csv.py	None	script	import pandas as pd\nimport lamindb as ln\n\nl...	WzrR-wd65Z1gusf-sMoiMw	None	None	None	True	False	2026-09-22 14:44:43.719619+00:00	1467	1467	1	None	None	15741	76
1819	EewE1LOV4req0000	create_probe_csv.py	None	script	"""Self-tracking script: create a small CSV ar...	B7-FHQA566f3ZAhe3eeARg	None	None	None	True	False	2026-09-22 14:33:52.358482+00:00	1466	1466	1	None	None	15739	76
1818	KH94KXtabo7Q0002	create_complex_source.py	None	script	"""Build a nested record graph on lamindata fo...	UVkP6uy8_FfEMQaiGECBCg	None	None	None	True	False	2026-09-16 11:05:10.399138+00:00	1	1	1	None	None	NaN	60
1817	KH94KXtabo7Q0001	create_complex_source.py	None	script	"""Build a nested record graph on lamindata fo...	o29gyra_S0__qaHuVahqJA	None	None	None	False	False	2026-09-16 11:01:11.435527+00:00	1	1	1	None	None	NaN	60
1816	KH94KXtabo7Q0000	create_complex_source.py	None	script	"""Build a nested record graph on lamindata fo...	gqwqbDOhzK4u2LPcW5443A	None	None	None	False	False	2026-09-16 10:36:34.224102+00:00	1	1	1	None	None	NaN	60
1815	LSAQXbD6rGdg0000	generate_patient_records.py	None	script	"""Generate reproducible fictional patient rec...	VBGshtrpm5piegpXSnuodQ	None	None	None	True	False	2026-09-15 08:56:15.161342+00:00	1220	1220	1	None	None	15143	76
1814	vUiKJplO1dRL0000	simulate_michaelis_menten.py	None	script	"""Simulate a Michaelis–Menten enzyme kinetics...	wPNhfrR_EBZk1RRifAG1hQ	None	None	None	True	False	2026-09-15 08:56:03.278169+00:00	1220	1220	1	None	None	15142	76

ULabel

	uid	name	description	reference	reference_type	is_locked	is_type	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	type_id
id
870	no2mLCN3	xferbench_fail	None	None	None	False	False	2026-09-16 10:36:42.764603+00:00	1	1	1	60	15215	868
869	TVP0pu9R	xferbench_pass	None	None	None	False	False	2026-09-16 10:36:42.307325+00:00	1	1	1	60	15215	868
868	suHk8o2k	xferbench_qc	None	None	None	False	True	2026-09-16 10:36:41.837480+00:00	1	1	1	60	15215	NaN
781	1HB4MOep	day	None	None	None	False	False	2026-08-21 08:43:08.599750+00:00	1	1	1	2	NaN	425
780	yvYm5DuA	h	None	None	None	False	False	2026-08-21 08:43:08.104982+00:00	1	1	1	2	NaN	425
777	f0vQmjTM	qPCR	None	None	None	False	False	2026-08-20 12:28:33.077386+00:00	1	1	1	2	NaN	316
776	vSfLr3qc	ELISA	None	None	None	False	False	2026-08-20 12:28:32.586336+00:00	1	1	1	2	NaN	316

******************

* module: bionty *

******************

CellLine

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
250	2rD83IhFD8zXmX	immortal uterine cervix-derived epithelial cel...	CLO:0000283	None	NaN	An immortal epithelial cell line cell that der...	False	2026-04-28 11:23:46.687389+00:00	1	1	1	46	7001	9
249	3mYHwNTcJYDLrt	immortal epithelial cell line cell	CLO:0000129	None	NaN	a immortal animal cell line that is derived fr...	False	2026-04-28 11:23:46.687389+00:00	1	1	1	46	7001	9
248	45i0CvX67rIhVi	immortal human uterine cervix-derived epitheli...	CLO:0000636	None	NaN	An immortal uterine cervix-derived epithelial ...	False	2026-04-28 11:23:45.353143+00:00	1	1	1	46	7001	9
247	4CdAW8HhaBZ3B5	HeLa cell	CLO:0003684	None	HeLa	an immortal human uterine cervix-derived epith...	False	2026-04-28 11:23:44.294879+00:00	1	1	1	46	7001	9
246	1n5kUkyJP7ekyJ	immortal human blood cell line cell	CLO:0000617	None	NaN	An immortal blood cell line cell that derives ...	False	2025-01-08 13:33:33.047544+00:00	1	1	1	2	NaN	9
245	5TRtcD7edroFSw	immortal blood cell line cell	CLO:0000149	None	immortal blood cell line	a immortal hematopoietic cell line that is der...	False	2025-01-08 13:33:33.047500+00:00	1	1	1	2	NaN	9
244	4HVCf9WcSdLlwt	RCB0806 cell	CLO:0050978	None	RCB0806|Jurkat	A immortal human blood cell line cell that has...	False	2025-01-08 13:33:32.819503+00:00	1	1	1	2	NaN	9

CellMarker

	uid	abbr	synonyms	description	name	gene_symbol	ncbi_gene_id	uniprotkb_id	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id	organism_id
id
83	3ZFziy5ims8JUV	None	NaN	None	CD14/19	NaN	NaN	NaN	False	2023-10-04 16:08:58.846323+00:00	1	1	1	2	None	NaN	2
82	1iLDs6cZIpxjB6	None	NaN	None	CD69	CD69	969	Q07108	False	2023-10-04 16:08:40.134192+00:00	1	1	1	2	None	7	2
81	31nZfqQo8yZgeb	None	NaN	None	CD103	ITGAE	3682	P38570	False	2023-10-04 16:08:40.134170+00:00	1	1	1	2	None	7	2
80	5c4A0r7gMiGwGk	None	NaN	None	CD95	FAS	2194	P49327	False	2023-10-04 16:08:40.134151+00:00	1	1	1	2	None	7	2
79	3IPMBjs68Vy1oM	None	NaN	None	CXCR4	CXCR4	7852	P61073	False	2023-10-04 16:08:40.134128+00:00	1	1	1	2	None	7	2
78	525YfNUB967zee	None	NaN	None	CD49B	ITGA2	3673	P17301	False	2023-10-04 16:08:40.134091+00:00	1	1	1	2	None	7	2
77	3l9bWDSZiukI6O	None	LIVE/DEAD	None	Dead	NaN	NaN	NaN	False	2023-07-26 13:25:18.219619+00:00	1	1	1	2	None	NaN	2

CellType

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
221	4zrSyDb4opmGJz	neoplastic epithelial cell	NaN	None	None	NaN	False	2026-04-14 08:59:53.779824+00:00	1	1	1	9	6113	NaN
220	23ekfCDhJCSN44	cancer associated fibroblast	NaN	None	None	NaN	False	2026-04-14 08:59:53.779824+00:00	1	1	1	9	6113	NaN
219	3hXuCKYHIHOjiS	perivascular cell	CL:4033054	None	None	A Cell That Is Adjacent To A Vessel. A Perivas...	False	2026-04-14 08:59:20.955797+00:00	1	1	1	9	6113	64
218	7KCFubjGu7ok8G	iPSC-induced neuron	NaN	None	None	NaN	False	2025-01-08 11:36:53.756884+00:00	1	1	1	2	NaN	NaN
217	2nWjcXRrdqX5g0	lymphoblast	CL:0017005	None	None	A Lymphocyte That Has Gotten Larger After Bein...	False	2025-01-07 09:41:49.139648+00:00	1	1	1	2	NaN	65
216	4qnxelJpe0dakV	retinal cell	CL:0009004	None	None	Any Cell In The Retina, The Innermost Layer Or...	False	2025-01-06 12:00:39.805850+00:00	1	1	1	2	NaN	65
215	1e5QBUmKJGM4e9	visual pigment cell	CL:0000149	None	None	NaN	False	2025-01-06 12:00:39.805825+00:00	1	1	1	2	NaN	65

DevelopmentalStage

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
44	5HWRj1ODkb6V1S	unknown	unknown	None	NaN	From CellxGene schema.	False	2024-12-05 16:37:36.726755+00:00	1	1	1	3	385	NaN
43	7k1A0zkTfOLQo4	human life cycle stage	HsapDv:0000000	None	developmental stage	A Spatiotemporal Region Encompassing Some Part...	False	2024-12-05 16:37:35.999196+00:00	1	1	1	3	384	49
42	5q73MbS33MJVGx	85-year-old human stage	HsapDv:0000211	None	NaN	Aged Stage That Refers To An Adult Who Is Over...	False	2024-12-05 16:37:35.196938+00:00	1	1	1	3	384	49
41	5QzRYqqcaGITDU	84-year-old human stage	HsapDv:0000210	None	NaN	Aged Stage That Refers To An Adult Who Is Over...	False	2024-12-05 16:37:35.196920+00:00	1	1	1	3	384	49
40	3MeD86peox5beX	82-year-old human stage	HsapDv:0000208	None	NaN	Aged Stage That Refers To An Adult Who Is Over...	False	2024-12-05 16:37:35.196903+00:00	1	1	1	3	384	49
39	1FAjljBZPandRY	81-year-old human stage	HsapDv:0000207	None	NaN	Aged Stage That Refers To An Adult Who Is Over...	False	2024-12-05 16:37:35.196887+00:00	1	1	1	3	384	49
38	2nEVCZzoSi6YS2	80-year-old human stage	HsapDv:0000206	None	NaN	Aged Stage That Refers To An Adult Who Is Over...	False	2024-12-05 16:37:35.196869+00:00	1	1	1	3	384	49

Disease

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
182	3lEY9l5KHXHvI6	precancerous condition	MONDO:0021074	None	precancerous condition|premalignant condition|...	A Pathological Process With Signs Indicating I...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
181	3UbujjzPMgLW9n	breast ductal adenocarcinoma	MONDO:0005590	None	ductal carcinoma of breast|mammary duct adenoc...	A Breast Carcinoma Arising From The Ducts. Whi...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
180	1yX8SwADeAa956	breast carcinoma	MONDO:0004989	None	mammary carcinoma|carcinoma of the breast|brea...	A Carcinoma That Arises From Epithelial Cells ...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
179	5BMsSAHuNlNkVR	breast adenocarcinoma	MONDO:0004988	None	adenocarcinoma of breast|adenocarcinoma of the...	A Carcinoma That Arises From Glandular Epithel...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
178	1vrnOyXFQ3Nd9W	breast carcinoma in situ	MONDO:0004658	None	stage 0 carcinoma of breast|non-infiltrating b...	A In Situ Carcinoma That Involves The Breast.	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
177	5y3Uc4S81tPlsw	in situ carcinoma	MONDO:0004647	None	stage 0 disease|non-invasive carcinoma|epithel...	A Malignant Epithelial Neoplasm Which Is Confi...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73
176	1jD296YK6NLFVu	breast intraductal proliferative lesion	MONDO:0004007	None	ductal intraepithelial neoplasia|mammary intra...	A Group Of Non-Invasive Epithelial Proliferati...	False	2026-04-13 15:09:54.889610+00:00	1	1	1	9	6070	73

Ethnicity

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
8	3N1q01iCP7hErP	na	na	NaN	NaN	From CellxGene schema.	False	2026-08-04 05:33:38.990134+00:00	1	1	1	60	12364	NaN
7	3FN797FUPWonJO	British in England and Scotland (1KGP)	HANCESTRO:0765	GBR	NaN	A population made up of 107 samples from Briti...	False	2025-04-30 14:28:53.884654+00:00	1	1	1	2	638	NaN
6	3AZVW16yI1BsV5	African American or Afro-Caribbean	HANCESTRO:0016	NaN	NaN	Includes Individuals Who Either Self-Report Or...	False	2024-12-05 16:37:41.019432+00:00	1	1	1	3	384	51
5	67yD7yy4XCWOLA	African American	HANCESTRO:0568	NaN	NaN	NaN	False	2024-12-05 16:37:40.220495+00:00	1	1	1	3	384	51
4	2dwBSQ1z0XEYfL	Asian	HANCESTRO:0008	NaN	Asian unspecified	Includes Individuals That Either Self-Report O...	False	2024-12-05 16:37:40.220454+00:00	1	1	1	3	384	51
3	5HWRj1ODkb6V1S	unknown	unknown	NaN	NaN	From CellxGene schema.	False	2024-12-02 08:58:00.689681+00:00	1	1	1	30	361	NaN
2	6Tnv21SwDbUrL5	ancestry category	HANCESTRO:0004	NaN	ancestral group	Population Category Defined Using Ancestry Inf...	False	2024-06-05 12:09:31.274046+00:00	1	1	1	2	181	51

ExperimentalFactor

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
63	2CIIhUdxb6DU9a	NEBNext Ultra II RNA Library Prep	NaN	None	NEBNext Ultra II RNA	NaN	False	2026-08-20 12:38:44.401629+00:00	1	1	1	2	None	NaN
62	13FoJ8KuqrUbp7	Illumina stranded mRNA library construction	NaN	None	Illumina Stranded mRNA	NaN	False	2026-08-20 12:38:43.915132+00:00	1	1	1	2	None	NaN
61	7BkAKOrhPpOCZy	Illumina NextSeq 2000	NaN	None	NextSeq 2000	NaN	False	2026-08-20 12:38:43.428186+00:00	1	1	1	2	None	NaN
60	011TlgkJL8DA4D	Illumina NovaSeq X Plus	NaN	None	NovaSeq X Plus	NaN	False	2026-08-20 12:38:42.916927+00:00	1	1	1	2	None	NaN
59	3C8KLOGpZkHsC5	RNA-Seq	EFO:0008896	None	NaN	Rna-Seq Is A Method That Involves Purifying Rn...	False	2026-06-03 04:50:44.387535+00:00	1	1	1	60	None	104
58	3VAgTSkxVwvsyT	Xenium Spatial Gene Expression	NaN	None	Xenium|10X Xenium	NaN	False	2025-12-09 12:46:38.150561+00:00	1	1	1	40	None	NaN
57	2UEkfRqukGb1oI	TraCe-seq	NaN	None	NaN	NaN	False	2025-01-08 12:43:38.479402+00:00	1	1	1	2	None	NaN

Gene

	uid	abbr	synonyms	description	symbol	stable_id	ensembl_gene_id	ncbi_gene_ids	biotype	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id	organism_id
id
154347	43PKjUN2TuRjeK	None	TMEM142A|CRACM1|FLJ14466	ORAI calcium release-activated calcium modulat...	ORAI1	None	ENSG00000293604	None	protein_coding	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154346	7hbNrFh6GVRtVn	None	NaN	novel protein	NaN	None	ENSG00000293600	None	protein_coding	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154345	2DLKDsGV0zX96L	None	NaN	novel transcript	NaN	None	ENSG00000293599	None	lncRNA	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154344	12nPu7ce9hLZ4k	None	NaN	long intergenic non-protein coding RNA 970	LINC00970	None	ENSG00000293597	None	lncRNA	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154343	42lwxhgTHxaNKI	None	NaN	novel transcript	NaN	None	ENSG00000293596	None	lncRNA	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154342	1cNzYeNWyn5iyY	None	FLJ40434	solute carrier family 25 member 3 pseudogene 1	SLC25A3P1	None	ENSG00000293595	None	lncRNA	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2
154341	6uPvR6SwrQ0xlj	None	NaN	ribosomal protein L41 (RPL41) pseudogene	NaN	None	ENSG00000293594	None	processed_pseudogene	False	2025-10-26 14:38:48.560365+00:00	1	1	1	9	1260	55	2

Organism

	uid	name	ontology_id	abbr	synonyms	description	scientific_name	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
54	7bjJiyyCekRwmb	zebra danio	NCBITaxon:7955	None	zebra fish|leopard danio|zebrafish	None	Danio rerio	False	2026-08-04 05:46:52.938760+00:00	1	1	1	60	12368	36
53	7m3CRmaeekDkVx	callithrix	NCBITaxon:1965096	None	NaN	None	Callithrix <subgenus>	False	2026-08-04 05:43:01.417474+00:00	1	1	1	60	12367	36
52	3qUn9Zrd0XtCmC	white-tufted-ear marmoset	NCBITaxon:9483	None	white ear-tufted marmoset|common marmoset	None	Callithrix jacchus	False	2026-08-04 05:42:47.582424+00:00	1	1	1	60	12367	36
51	3PVIOuei7zIhdo	apes	NCBITaxon:314295	None	ape	None	Hominoidea	False	2026-08-04 05:42:35.762334+00:00	1	1	1	60	12367	36
50	12laiQ02YZOUpR	great apes	NCBITaxon:9604	None	NaN	None	Hominidae	False	2026-08-04 05:42:35.762334+00:00	1	1	1	60	12367	36
49	6yRA7MaNmfnZHP	homininae	NCBITaxon:207598	None	NaN	None	Homininae	False	2026-08-04 05:42:35.762334+00:00	1	1	1	60	12367	36
48	7I2BNel8LGSlFQ	chimpanzees	NCBITaxon:9596	None	NaN	None	Pan	False	2026-08-04 05:42:23.879737+00:00	1	1	1	60	12367	36

Phenotype

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
3	5HWRj1ODkb6V1S	unknown	unknown	None	None	From CellxGene schema.	False	2024-12-20 13:27:12.909577+00:00	1	1	1	2	405	NaN
2	3OV8JZsSny1UQm	female	PATO:0000383	None	None	A Biological Sex Quality Inhering In An Indivi...	False	2024-06-05 12:09:14.248434+00:00	1	1	1	2	181	48
1	kniZxLLf63zsQC	male	PATO:0000384	None	None	A Biological Sex Quality Inhering In An Indivi...	False	2024-06-05 12:09:13.824774+00:00	1	1	1	2	181	48

Protein

	uid	abbr	synonyms	description	name	uniprotkb_id	length	gene_symbol	ensembl_gene_ids	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id	organism_id
id
239	231ffq2p4OKIZB	None	None	None	VEGF	None	None	None	None	False	2024-12-13 23:13:13.448561+00:00	1	1	1	9	392	None	2
238	DdtaoUouGdlIFF	None	None	None	TSLP	None	None	None	None	False	2024-12-13 23:13:13.448541+00:00	1	1	1	9	392	None	2
237	2eU4TKDBtwKeND	None	None	None	TRAIL	None	None	None	None	False	2024-12-13 23:13:13.448521+00:00	1	1	1	9	392	None	2
236	5VKVwilvkbLjJ1	None	None	None	TL1A	None	None	None	None	False	2024-12-13 23:13:13.448499+00:00	1	1	1	9	392	None	2
235	56Q2NU5LlFbQox	None	None	None	TGF-beta1	None	None	None	None	False	2024-12-13 23:13:13.448478+00:00	1	1	1	9	392	None	2
234	5yxiGKssUC6HCQ	None	None	None	PSPN	None	None	None	None	False	2024-12-13 23:13:13.448458+00:00	1	1	1	9	392	None	2
233	3WgMz3uEzIODQW	None	None	None	PBS	None	None	None	None	False	2024-12-13 23:13:13.448437+00:00	1	1	1	9	392	None	2

Source

	uid	entity	organism	name	version	in_db	currently_used	description	url	md5	source_website	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	dataframe_artifact_id
id
134	7au3ZQrD	bionty.Ethnicity	human	hancestro	2025-10-14	False	False	Human Ancestry Ontology	http://purl.obolibrary.org/obo/hancestro/relea...	None	https://github.com/EBISPOT/hancestro	False	2026-08-20 14:21:37.383011+00:00	1	1	1	2	None	None
133	6na9vRls	bionty.DevelopmentalStage	mouse	mmusdv	2025-01-23	False	False	Mouse Developmental Stages	https://github.com/obophenotype/developmental-...	None	https://github.com/obophenotype/developmental-...	False	2026-08-20 14:21:37.130015+00:00	1	1	1	2	None	None
132	7JO1x6p1	bionty.DevelopmentalStage	human	hsapdv	2025-01-23	False	False	Human Developmental Stages	https://github.com/obophenotype/developmental-...	None	https://github.com/obophenotype/developmental-...	False	2026-08-20 14:21:36.874259+00:00	1	1	1	2	None	None
131	5ax0h5Ue	bionty.Pathway	all	pw	7.96	False	False	Pathway Ontology	http://purl.obolibrary.org/obo/pw/7.96/pw.owl	None	https://www.ebi.ac.uk/ols/ontologies/pw	False	2026-08-20 14:21:35.128816+00:00	1	1	1	2	None	None
130	2UZHts8n	bionty.Pathway	all	go	2025-10-10	False	False	Gene Ontology	http://purl.obolibrary.org/obo/go/releases/202...	None	http://geneontology.org	False	2026-08-20 14:21:34.876775+00:00	1	1	1	2	None	None
129	h5EFbQNJ	bionty.Phenotype	human	hp	2026-01-08	False	False	Human Phenotype Ontology	https://github.com/obophenotype/human-phenotyp...	None	https://hpo.jax.org	False	2026-08-20 14:21:34.093729+00:00	1	1	1	2	None	None
128	2rMQe2ZH	bionty.Phenotype	all	pato	2025-05-14	False	False	Phenotype And Trait Ontology	http://purl.obolibrary.org/obo/pato/releases/2...	None	https://github.com/pato-ontology/pato	False	2026-08-20 14:21:33.841764+00:00	1	1	1	2	None	None

Tissue

	uid	name	ontology_id	abbr	synonyms	description	is_locked	created_at	branch_id	created_on_id	space_id	created_by_id	run_id	source_id
id
127	4QeoxdKp9KxQM8	body proper	UBERON:0013702	None	NaN	The Region Of The Organism Associated With The...	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
126	3XuRxEhwtpvdlX	main body axis	UBERON:0013701	None	NaN	A Principle Subdivision Of An Organism That In...	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
125	7ZCdHnvNOjjv2F	subdivision of organism along main body axis	UBERON:0011676	None	axial subdivision of organism	A Major Subdivision Of An Organism That Divide...	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
124	31GPuSXPc7Z4Tz	subdivision of trunk	UBERON:0009569	None	trunk subdivision|region of trunk	NaN	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
123	7MjYxh4jwppeOe	trunk	UBERON:0002100	None	thoracolumbar region|trunk region|torso	Organism Subdivision Which Is The Part Of The ...	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
122	1boGOeV9Xx1pmN	multicellular organism	UBERON:0000468	None	multi-cellular organism	Anatomical Structure That Is An Individual Mem...	False	2025-03-20 22:20:26.347506+00:00	1	1	1	35	536	68
121	51UEcfPxUr9DU7	chest	UBERON:0001443	None	pectus|ventral part of thoracic region|front o...	Subdivision Of Trunk Proper, Which Is Demarcat...	False	2025-03-20 22:20:24.962147+00:00	1	1	1	35	536	68

! skipping module 'pertdb': 'pertdb' wasn't configured in this environment -- run: lamin settings modules set pertdb
If your database instance also doesn't have it, go to your instance settings page and add it under 'schema modules' (or ask an admin to do so).

Get one object

get() errors if it doesn’t find exactly one matching object:

db.Record.get("HhKWgzjVW6cfnVep")  # by uid
db.Record.get(name="EXP-RNA-001")  # by field, here the name field

Show code cell output Hide code cell output

Record(uid='HhKWgzjVW6cfnVep', is_type=False, name='EXP-RNA-001', description=None, reference=None, reference_type=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, created_by_id=2, type_id='15982', schema_id=None, run_id=None, created_at=2026-05-04 13:46:47 UTC, is_locked=False)

Search

You can search every registry via search(). For example, the Artifact registry:

db.Artifact.search("iris").to_dataframe()

Show code cell output Hide code cell output

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
744	KIkHQdyHQVQO1KrXtVKA	NaN	Iris study 1 - after measuring sepal & petal m...	.parquet	NaN	DataFrame	5347.0	ZVkGt2eQubiGc79aOcRfVQ	NaN	None	...	True	False	2024-06-06 11:13:05.179131+00:00	1	1	1	2	206	None	2
683	2r8SFCH8TlydF0xnb0Uk	iris_studies/study1_raw_images	NaN		NaN	NaN	642480.0	Iip0GzbvjACYC2O7ZrtZiQ	49.0	None	...	True	False	2024-05-23 16:10:13.728116+00:00	1	1	1	2	173	None	9
684	BWL7PYFvsZ8jA8YJOCz6	iris_studies/study2_raw_images	NaN		NaN	NaN	667449.0	BfyPwSCYPaHRKe4bJk7yRw	51.0	None	...	True	False	2024-05-23 16:10:13.895052+00:00	1	1	1	2	173	None	9
682	K415DrXcuPiJmXlX5iXH	iris_studies/study0_raw_images	NaN		NaN	NaN	658465.0	IVKGMfNwi8zKvnpaD_gG7w	51.0	None	...	False	False	2024-05-23 16:10:13.393304+00:00	1	1	1	2	173	None	9
25855	K415DrXcuPiJmXlX5iXI	iris_studies/study0_raw_images	NaN		NaN	NaN	658486.0	tt98Ho0i3BlFtV84BlI6Dw	52.0	None	...	True	False	2026-07-07 12:24:59.162462+00:00	1	1	1	2	NaN	None	46
17799	ZIMVu6cUu2nkyXuK0000	NaN	log streams of run Xk1i2GFNykkkijDj	.txt	__lamindb_run__	NaN	12430.0	GIRIs96TiSR4dAp4XC5hZA	NaN	None	...	True	False	2026-03-20 16:42:05.673008+00:00	1	1	1	2	NaN	None	18
23857	r9b1iRIs7xuCzk7j0000	NaN	log streams of run vaRP1uN7dBA9to9O	.txt	__lamindb_run__	NaN	15497.0	UybnX6pkLA-3kkdZLAMbow	NaN	None	...	True	False	2026-06-05 14:38:59.819115+00:00	1	1	1	2	NaN	None	18
26631	qGXvU8SFFsQclgR10000	Uploads/iris-0337d20a3b7273aa0ddaa7d6afb57a37a...	NaN	.jpg	NaN	NaN	14529.0	e0Gct8LodEyQzNwy1glOPA	NaN	None	...	True	False	2026-07-14 14:51:33.166215+00:00	1	1	1	2	NaN	None	46

8 rows × 22 columns

Here is more background on search and examples for searching the cell type registry: How does search work?

Auto-completing can also be a good way of finding an object:

records = db.Record.lookup()
experiment_1 = records.exp_rna_001  # assuming a record named 'EXP-RNA-001' exists
experiment_1

Show code cell output Hide code cell output

Record(uid='HhKWgzjVW6cfnVep', is_type=False, name='EXP-RNA-001', description=None, reference=None, reference_type=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, created_by_id=2, type_id='15982', schema_id=None, run_id=None, created_at=2026-05-04 13:46:47 UTC, is_locked=False)

This works for any BaseSQLRecord class, e.g., also for plugin bionty:

cell_types = db.bionty.CellType.lookup()

Queries

By fields

Use filter() to query artifacts by fields, e.g., by suffix:

qs = db.Artifact.filter(suffix=".csv")
qs

Show code cell output Hide code cell output

<ArtifactQuerySet [Artifact(uid='TxO5CS0h77it3cEl0001', key='nf-core/scrnaseq/samplesheet-2-0.csv', description=None, suffix='.csv', kind='dataset', otype='DataFrame', size=850.0, hash='6NgnIPdAYcwCDbcikid6ZQ', n_files=None, n_observations=3.0, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id='139', created_by_id=2, created_at=2025-04-24 15:09:40 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='qCEizASjJg7lfbDO0000', key=None, description='CSV upload test efba5645', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='du-FuXzpOCU4K0RlIEmuBw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6838', schema_id=None, created_by_id=18, created_at=2026-04-25 05:45:13 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='k2mo3InmZviAFBQL0000', key='forms/test_form_fred.csv', description=None, suffix='.csv', kind='dataset', otype='DataFrame', size=812.0, hash='XARxkaA_Xhcs5yNjlsdWTQ', n_files=None, n_observations=3.0, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id='133', created_by_id=24, created_at=2025-04-30 09:24:17 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='ZRaZhr4HO0ghFVfk0000', key='forms/test_form_sunny.csv', description=None, suffix='.csv', kind='dataset', otype='DataFrame', size=829.0, hash='y7GGkIq-Pz3U37HLHoBKTA', n_files=None, n_observations=3.0, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id='133', created_by_id=2, created_at=2025-04-30 11:44:13 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='MDG7BbeFVPvEyyUb0000', key='schmidt22/raw-data/gws-crispr-ifng-readout.csv', description='CRIPSRa GWS IFNG readout 2023-08-25', suffix='.csv', kind=None, otype=None, size=1729694.0, hash='WhvwTUnFe29PopBqMp5UkQ', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id=None, created_by_id=2, created_at=2024-12-03 12:14:50 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='tNa9JwfjVo3n9peM0000', key=None, description='CSV upload test c1bf706e', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='sjI9d7jzpuL5vn9f7Ey6pg', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6746', schema_id=None, created_by_id=18, created_at=2026-04-23 12:07:52 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='IGXNLaaBmuyU6wWN0000', key=None, description='CSV upload test 1cab37d3', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='e4I1orzM1jhY6PjTEoH5kg', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6745', schema_id=None, created_by_id=18, created_at=2026-04-23 12:08:01 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='TxO5CS0h77it3cEl0000', key='nf-core/scrnaseq/samplesheet-2-0.csv', description='https://github.com/nf-core/test-datasets/raw/scrnaseq/samplesheet-2-0.csv', suffix='.csv', kind=None, otype=None, size=854.0, hash='WjKh69Ksaso2CkP0OO_c5Q', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id='133', created_by_id=2, created_at=2025-04-22 10:33:14 UTC, is_locked=False, version_tag=None, is_latest=False), Artifact(uid='6XT5pVhWB9hcTTmG0000', key='scrnaseq_input/samplesheet.csv', description=None, suffix='.csv', kind=None, otype=None, size=236.0, hash='QXMVrT5ZucmidIxbYJ9KHA', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id=None, created_by_id=6, created_at=2024-10-03 07:31:27 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='QJoGe0ALyOcsvUcA0000', key='samples/xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE/Xenium_V1_humanLung_Cancer_FFPE_he_imagealignment.csv', description=None, suffix='.csv', kind=None, otype=None, size=126.0, hash='LJ8xyu4DGqsDT8SEEnhxSw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=23, run_id='488', schema_id=None, created_by_id=2, created_at=2025-02-07 12:53:34 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='iXG6VILSb8kO8FlZ0000', key=None, description='CSV upload test e0593b52', suffix='.csv', kind=None, otype='DataFrame', size=41.0, hash='4wlxSR5lpONGfzfKCkqNqQ', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6966', schema_id=None, created_by_id=54, created_at=2026-04-28 08:15:46 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='QsiBofOFWbxN4QKP0000', key=None, description='CSV upload test bebff57f', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='H1c7Sa71rrtzcysPQ-uyLA', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6982', schema_id=None, created_by_id=18, created_at=2026-04-28 09:16:22 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='t0SCjdlXN0WJ0ca70000', key=None, description='CSV upload test c935762b', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='bu7DZpN8sAF2VPTR2YgCGw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6750', schema_id=None, created_by_id=18, created_at=2026-04-23 12:10:45 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='2oQPB3QJaFPweBnm0000', key=None, description='CSV upload test 0bec62dd', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='HQi3aiai4uDUdBycNxuieQ', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6749', schema_id=None, created_by_id=18, created_at=2026-04-23 12:11:19 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='yEBVbuzVacAuOIDz0000', key=None, description='CSV upload test 4da9cdd8', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='kHDs0YWfjMyQuCmHw0hJ9A', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6933', schema_id=None, created_by_id=18, created_at=2026-04-27 14:01:13 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='RcQkAIDvCMZB79jh0000', key=None, description='CSV upload test 53feb2cc', suffix='.csv', kind=None, otype='DataFrame', size=41.0, hash='2UHYwIYKxKKRN18KlRA_Kw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6962', schema_id=None, created_by_id=54, created_at=2026-04-28 07:58:52 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='QA6RSfviURVcnA5W0000', key='Uploads/PRLciWQorcA8CYW60001__2026-04-27T01-34-07-703Z.csv', description=None, suffix='.csv', kind=None, otype='DataFrame', size=318.0, hash='jFvIdsuthMcHBF3YGkcqvw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id=None, schema_id=None, created_by_id=20, created_at=2026-04-27 01:34:12 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='uWcVCFwaj9ispTkA0000', key=None, description='CSV upload test 19f49eff', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='0zZ3MjMHx8fs9iS8sthjhw', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6932', schema_id=None, created_by_id=18, created_at=2026-04-27 14:01:20 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='Tvy3d217OdeAcDqd0000', key=None, description='CSV upload test 264d4657', suffix='.csv', kind=None, otype='DataFrame', size=40.0, hash='qvXg1lA_D-tUwlL_RmexgA', n_files=None, n_observations=None, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='6948', schema_id=None, created_by_id=18, created_at=2026-04-28 06:10:15 UTC, is_locked=False, version_tag=None, is_latest=True), Artifact(uid='eI8VZCpM9ajGCeiT0000', key='sheet_exports/Demo scRNA samples 2025-08.csv', description='Export of sheet 0LntuZaw3YUsNriI: ', suffix='.csv', kind='dataset', otype='DataFrame', size=241.0, hash='wZIzufKIrL-JRJg4FF4bfg', n_files=None, n_observations=2.0, extra_data=None, branch_id=1, created_on_id=1, space_id=1, storage_id=2, run_id='816', schema_id='160', created_by_id=2, created_at=2025-08-14 13:52:37 UTC, is_locked=False, version_tag=None, is_latest=True), '...(remaining elements truncated)...']>

This returns a QuerySet with the objects that match the filter. You can filter a queryset:

qs = qs.filter(records=experiment_1)  # filter to artifacts annotated with a record
qs.to_dataframe()

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	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
21809	vZDmGqGUZRQovJ1c0000	sheet_exports/2026-05-05: RNA-seq samples.csv	Export of sheet fphyKgWVQ8e3YiiF: Uploaded fro...	.csv	dataset	DataFrame	1623.0	JMLW9LmuKWqNtrnXuGLXdQ	None	7.0	...	True	False	2026-05-05 16:38:04.973473+00:00	1	1	1	2	7406	132	2

1 rows × 22 columns

To access the results in a queryset:

• to_dataframe(): A pandas DataFrame with each object in a row.

• one(): Exactly one object. Will raise an error if there is none. Is equivalent to the .get() method shown above.

• one_or_none(): Either one object or None if there is no query result.

You can also:

• use the QuerySet as an iterator

• get individual objects via qs[0], qs[1]

The SQLRecord classes (registries) in LaminDB are Django Models and any Django query works. Django has a double-under-score syntax to filter based on related tables. This syntax enables you to traverse several layers of relations and comparators.

For example, the following filter selects artifacts based on the users who ran the generating notebook. Under the hood, in the SQL database, it’s joining the artifact table with the user table.

db.Artifact.filter(created_by__handle__startswith="testuse").to_dataframe()

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! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
31264	g1uMDs0pD0YOqv570000	proteins/favorite_protein.fasta	Human lysozyme C (P61626) sequence in FASTA fo...	.fasta	None	NaN	164.0	GAIdBieLvpawYHF9RVeAWA	None	None	...	True	False	2026-09-07 06:24:31.330992+00:00	1	1	1	2	14262	None	18
31261	lr9Dzpx1ikjncS6B0000	proteins/protein.fasta	avGFP (P42212) amino acid sequence in FASTA fo...	.fasta	None	NaN	310.0	FAicO7EuYVgg-fbnIhS0Dw	None	None	...	True	False	2026-09-07 06:23:47.778386+00:00	1	1	1	2	14260	None	18
31259	Vrp32G5NMTMNLA8C0000	NaN	Green fluorescent protein (GFP) sequence	.fasta	None	NaN	288.0	fiZX67uu9zP_AECYfjmWgQ	None	None	...	True	False	2026-09-07 06:23:14.043343+00:00	1	1	1	2	14258	None	18
28571	wx0Y1Txx6TWXV83G0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	15558833.0	WVZ-CfG1aGQTZ36lGE1b2w	None	None	...	True	False	2026-08-03 04:52:58.273324+00:00	1	1	1	37	12181	None	18
28570	I7VXGbPYBXK7NwsR0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	15647698.0	wFV00SE1eHfC_tPC0G2ASg	None	None	...	True	False	2026-08-03 04:52:58.245177+00:00	1	1	1	37	12181	None	18
28569	8wrDnwFB9fd9FvVj0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	247006.0	aE3A7RMjhrpOeeuE-dBkHg	None	None	...	True	False	2026-08-03 04:51:27.823107+00:00	1	1	1	37	12181	None	18
28568	uv0Dp1MCzo3AKsHf0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	241260.0	zl5DXxY-oKXE5CJSUgif9g	None	None	...	True	False	2026-08-03 04:51:27.823342+00:00	1	1	1	37	12181	None	18
28566	grv1gDNXKDlcMu6e0000	profile-submit/nNIYDyCgntDCYlM9LA2G/star/mtx_c...	Output artifact for run 12180	.rds	None	NaN	15558833.0	WVZ-CfG1aGQTZ36lGE1b2w	None	None	...	True	False	2026-08-03 04:51:08.237491+00:00	1	1	1	37	12180	None	18
28565	dq1tc0quQelnG4bl0000	profile-submit/nNIYDyCgntDCYlM9LA2G/star/mtx_c...	Output artifact for run 12180	.rds	None	NaN	15647698.0	wFV00SE1eHfC_tPC0G2ASg	None	None	...	True	False	2026-08-03 04:51:08.219823+00:00	1	1	1	37	12180	None	18
28564	ZsMm2lR70Vp6kcWZ0000	profile-submit/nNIYDyCgntDCYlM9LA2G/star/mtx_c...	Output artifact for run 12180	.rds	None	NaN	241260.0	zl5DXxY-oKXE5CJSUgif9g	None	None	...	True	False	2026-08-03 04:49:42.856567+00:00	1	1	1	37	12180	None	18
28563	QAwuHiMo5FOSWXO50000	profile-submit/nNIYDyCgntDCYlM9LA2G/star/mtx_c...	Output artifact for run 12180	.rds	None	NaN	247006.0	aE3A7RMjhrpOeeuE-dBkHg	None	None	...	True	False	2026-08-03 04:49:37.648943+00:00	1	1	1	37	12180	None	18
28561	ApOZV9egcoFNxHAF0000	profile-submit/f3SRoG95CH2zacfrKlxD/star/mtx_c...	Output artifact for run 12182	.rds	None	NaN	241172.0	s8VBjPPzHCkqZv3SVG6wIg	None	None	...	True	False	2026-08-03 04:49:25.951088+00:00	1	1	1	37	12182	None	18
28560	rttfSewCR2M3Qb020000	profile-submit/f3SRoG95CH2zacfrKlxD/star/mtx_c...	Output artifact for run 12182	.rds	None	NaN	247005.0	iykSswvk3CYk-VfJ_mC_og	None	None	...	True	False	2026-08-03 04:49:25.937788+00:00	1	1	1	37	12182	None	18
28559	bWGJmR5q1TslsHih0000	profile-submit/f3SRoG95CH2zacfrKlxD/star/mtx_c...	Output artifact for run 12182	.rds	None	NaN	15558833.0	WVZ-CfG1aGQTZ36lGE1b2w	None	None	...	True	False	2026-08-03 04:49:06.478341+00:00	1	1	1	37	12182	None	18
28558	HlIo4lt21s8OoUce0000	profile-submit/f3SRoG95CH2zacfrKlxD/star/mtx_c...	Output artifact for run 12182	.rds	None	NaN	15647698.0	wFV00SE1eHfC_tPC0G2ASg	None	None	...	True	False	2026-08-03 04:49:06.478724+00:00	1	1	1	37	12182	None	18
28557	5V1NZi6JS75SC8iL0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.h5ad	None	AnnData	114099984.0	SnuMvX6hlzvF0TM29OrcQg	None	None	...	True	False	2026-08-03 04:47:38.244697+00:00	1	1	1	37	12181	None	18
28555	Lclppakdaxvco1Yt0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.h5ad	None	AnnData	1262512.0	oCRvreOC64KXnfeUsP1llg	None	None	...	True	False	2026-08-03 04:47:17.904476+00:00	1	1	1	37	12181	None	18
28553	HbC9rLR623ATowPV0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	7418438.0	0wODF4VDxCX6xnV-YPW0xQ	None	None	...	True	False	2026-08-03 04:46:48.250422+00:00	1	1	1	37	12181	None	18
28552	tBZezIPdoouEhtEN0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	7376591.0	_AMnH1dA1KgqM7Y3dMMU9Q	None	None	...	True	False	2026-08-03 04:46:48.163325+00:00	1	1	1	37	12181	None	18
28551	enF2nQMNXMpkiIWK0000	profile-submit/vTMSBjI45T4kkPtdxovK/star/mtx_c...	Output artifact for run 12181	.rds	None	NaN	7426758.0	HjZvqMKuAOkdxbH1EBQUzg	None	None	...	True	False	2026-08-03 04:45:48.077355+00:00	1	1	1	37	12181	None	18

20 rows × 22 columns

Another example would be querying datasets that measure a particular feature. For instance, which datasets measure expression of CD8A:

cd8a = db.bionty.Gene.get(symbol="CD8A")
# query for all schemas that contain CD8A
schemas_with_cd8a = db.Schema.filter(genes=cd8a)
# get all artifacts
db.Artifact.filter(schemas__in=schemas_with_cd8a).to_dataframe()

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! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
19678	myXXk4pUIgu7jPz00001	sample_datasets/xenium1_curated_breast_carcino...	NaN	.zarr	dataset	SpatialData	3.511626e+07	CGIUfJc1GcpISZbTS9Ph7A	148.0	NaN	...	True	False	2026-04-14 09:00:18.158778+00:00	1	1	1	2	6113	198	9
12372	ERCIUR3bgOOy6uxK0000	examples/dataset2.h5ad	NaN	.h5ad	dataset	AnnData	2.689600e+04	RKJjWbINYNIwYU8BxCejMw	NaN	3.0	...	True	False	2025-11-20 11:04:08.172526+00:00	1	1	1	2	NaN	151	6
11833	9K1dteZ6Qx0EXK8g0000	example_datasets/mini_immuno/dataset1.h5ad	Flow cytometry readouts on invitro cell culture	.h5ad	dataset	AnnData	3.167200e+04	FB3CeMjmg1ivN6HDy6wsSg	NaN	3.0	...	True	False	2025-07-29 12:27:25.572900+00:00	1	1	1	2	791	151	9
1132	AHIfMnXepm6KaEaH0000	scrna/Parse_10M_PBMC_cytokines_curated.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	3.822207e+10	snBmwsareebO03_9NPvY_w	1053.0	9697974.0	...	True	False	2024-12-16 22:39:02.039538+00:00	1	1	1	2	401	NaN	9
1117	xepHn6ScXGs5s1Te0001	example_datasets/small_dataset1.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	1.985300e+04	xkq9-kEUEChvxq-89_aJ7Q	57.0	3.0	...	True	False	2024-12-16 09:13:47.043028+00:00	1	1	1	2	394	NaN	9
1116	mKo82UispVElpGtP0002	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.508800e+04	YMNwVfQZ78zwkB4shAQMfQ	NaN	3.0	...	True	False	2024-12-16 09:13:19.877258+00:00	1	1	1	2	394	NaN	9
1096	LmlgCMQRhSEHtcbG0000	census_immune_cells.tiledbsoma	tiledbsoma experiment for Immune cells	.tiledbsoma	NaN	tiledbsoma	1.268083e+09	Rug1115Hhc44XG_OvdICRw	442.0	73047.0	...	True	False	2024-12-05 19:14:39.282533+00:00	1	1	1	2	384	NaN	3
1090	NiaMP8YQMbmkdOgnAa1T	cell-census/2024-07-01/h5ads/f64e1be1-de15-4d2...	Immune cells	.h5ad	dataset	AnnData	2.854344e+09	3oh1Yk3fZPQMCuJWbhZ4zQ	NaN	73047.0	...	True	False	2024-12-05 16:37:13.463549+00:00	1	1	1	16	385	NaN	3
1082	lNBsZ6Zd02kteKnK0000	schmidt22/summary_anndata.h5ad	analyzed anndata of schmidt22 perturbseq	.h5ad	dataset	AnnData	2.067439e+07	hIIpdQq3gbqt5FJs0KtwEA	NaN	853.0	...	True	False	2024-12-04 12:51:18.725509+00:00	1	1	1	2	378	NaN	2
1071	xepHn6ScXGs5s1Te0000	example_datasets/small_dataset1.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	1.866200e+04	xFKN6Uzvhz-OXOEr9HmPKQ	53.0	3.0	...	False	False	2024-12-03 14:05:19.776525+00:00	1	1	1	2	373	NaN	3
1070	mKo82UispVElpGtP0001	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.564800e+04	eJnHmQZgRQbUMkij-ziqeA	NaN	3.0	...	False	False	2024-12-03 14:04:47.882577+00:00	1	1	1	2	373	NaN	3
1045	7dVluLROpalzEh8mNyxk	cell-census/2023-12-15/h5ads/02faf712-92d4-458...	Renal cell carcinoma, pre aPD1, kidney Puck_20...	.h5ad	NaN	AnnData	1.399786e+07	YNYuokfAoDFxdaRILjmU9w	NaN	17612.0	...	True	False	2024-12-02 08:57:19.308058+00:00	1	1	1	16	361	NaN	30
1010	dP0F1fEQWtorhDaI0000	example_datasets/small_dataset2.h5ad	NaN	.h5ad	dataset	AnnData	2.122400e+04	7ok_2cIe73owydEGaj7m0A	NaN	3.0	...	True	False	2024-11-25 14:59:38.945319+00:00	1	1	1	2	302	NaN	9
1009	mKo82UispVElpGtP0000	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.335200e+04	NYni1vTRM7pqfle8ufPZwQ	NaN	3.0	...	False	False	2024-11-25 14:59:09.484279+00:00	1	1	1	2	302	NaN	9
938	3TNCsZZcnIBv2WGb0001	NaN	10x reference adata, trusted cell type annotation	.h5ad	dataset	AnnData	8.516640e+05	iETHP3Lw-tVqZxYAuEC-SA	NaN	70.0	...	True	False	2024-10-18 21:46:55.467982+00:00	1	1	1	2	305	NaN	9
937	3TNCsZZcnIBv2WGb0000	NaN	10x reference adata	.h5ad	dataset	AnnData	8.598400e+05	MAjl6lrjrcjqhUUA0ixMKA	NaN	70.0	...	False	False	2024-10-18 21:45:46.636210+00:00	1	1	1	2	305	NaN	9
750	PrHBuKLflU03CeI2xNPJ	NaN	10x reference adata	.h5ad	NaN	AnnData	8.577520e+05	c9ukVXVfpdaH2BWaqBfK4g	NaN	70.0	...	True	False	2024-06-26 10:00:08.928727+00:00	1	1	1	2	209	NaN	2
725	CFcQxNjzSRzWZrVhBk65	NaN	Kuppe 2022, ATAC	.anndata.zarr	NaN	AnnData	2.883708e+09	cqrk4idQ_WGjTe6KBrIKgg	2799.0	NaN	...	True	False	2024-06-05 10:21:25.684256+00:00	1	1	1	2	181	NaN	2
708	ytL7CXi5peqhfSPNSFVG	NaN	Kuppe 2022, RNA	.anndata.zarr	NaN	AnnData	3.107879e+09	tMzcoJ_1iz4Zsdvr-sjt6A	3380.0	NaN	...	True	False	2024-06-26 10:00:29.405916+00:00	1	1	1	2	181	NaN	2
706	psrHlYkmysrxtAL3RBTo	NaN	Kuppe 2022, Visium adata	.anndata.zarr	NaN	AnnData	6.510761e+07	WN5GxCkcKeO5UElDZ2IA0A	206.0	NaN	...	True	False	2024-06-04 12:33:00.419035+00:00	1	1	1	2	181	NaN	2

20 rows × 22 columns

Instead of splitting this across three queries, the double-underscore syntax allows you to define a path for one query:

db.Artifact.filter(schemas__genes__symbol="CD8A").to_dataframe()

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! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
19678	myXXk4pUIgu7jPz00001	sample_datasets/xenium1_curated_breast_carcino...	NaN	.zarr	dataset	SpatialData	3.511626e+07	CGIUfJc1GcpISZbTS9Ph7A	148.0	NaN	...	True	False	2026-04-14 09:00:18.158778+00:00	1	1	1	2	6113	198	9
12372	ERCIUR3bgOOy6uxK0000	examples/dataset2.h5ad	NaN	.h5ad	dataset	AnnData	2.689600e+04	RKJjWbINYNIwYU8BxCejMw	NaN	3.0	...	True	False	2025-11-20 11:04:08.172526+00:00	1	1	1	2	NaN	151	6
11833	9K1dteZ6Qx0EXK8g0000	example_datasets/mini_immuno/dataset1.h5ad	Flow cytometry readouts on invitro cell culture	.h5ad	dataset	AnnData	3.167200e+04	FB3CeMjmg1ivN6HDy6wsSg	NaN	3.0	...	True	False	2025-07-29 12:27:25.572900+00:00	1	1	1	2	791	151	9
1132	AHIfMnXepm6KaEaH0000	scrna/Parse_10M_PBMC_cytokines_curated.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	3.822207e+10	snBmwsareebO03_9NPvY_w	1053.0	9697974.0	...	True	False	2024-12-16 22:39:02.039538+00:00	1	1	1	2	401	NaN	9
1117	xepHn6ScXGs5s1Te0001	example_datasets/small_dataset1.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	1.985300e+04	xkq9-kEUEChvxq-89_aJ7Q	57.0	3.0	...	True	False	2024-12-16 09:13:47.043028+00:00	1	1	1	2	394	NaN	9
1116	mKo82UispVElpGtP0002	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.508800e+04	YMNwVfQZ78zwkB4shAQMfQ	NaN	3.0	...	True	False	2024-12-16 09:13:19.877258+00:00	1	1	1	2	394	NaN	9
1096	LmlgCMQRhSEHtcbG0000	census_immune_cells.tiledbsoma	tiledbsoma experiment for Immune cells	.tiledbsoma	NaN	tiledbsoma	1.268083e+09	Rug1115Hhc44XG_OvdICRw	442.0	73047.0	...	True	False	2024-12-05 19:14:39.282533+00:00	1	1	1	2	384	NaN	3
1090	NiaMP8YQMbmkdOgnAa1T	cell-census/2024-07-01/h5ads/f64e1be1-de15-4d2...	Immune cells	.h5ad	dataset	AnnData	2.854344e+09	3oh1Yk3fZPQMCuJWbhZ4zQ	NaN	73047.0	...	True	False	2024-12-05 16:37:13.463549+00:00	1	1	1	16	385	NaN	3
1082	lNBsZ6Zd02kteKnK0000	schmidt22/summary_anndata.h5ad	analyzed anndata of schmidt22 perturbseq	.h5ad	dataset	AnnData	2.067439e+07	hIIpdQq3gbqt5FJs0KtwEA	NaN	853.0	...	True	False	2024-12-04 12:51:18.725509+00:00	1	1	1	2	378	NaN	2
1071	xepHn6ScXGs5s1Te0000	example_datasets/small_dataset1.tiledbsoma	NaN	.tiledbsoma	NaN	tiledbsoma	1.866200e+04	xFKN6Uzvhz-OXOEr9HmPKQ	53.0	3.0	...	False	False	2024-12-03 14:05:19.776525+00:00	1	1	1	2	373	NaN	3
1070	mKo82UispVElpGtP0001	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.564800e+04	eJnHmQZgRQbUMkij-ziqeA	NaN	3.0	...	False	False	2024-12-03 14:04:47.882577+00:00	1	1	1	2	373	NaN	3
1045	7dVluLROpalzEh8mNyxk	cell-census/2023-12-15/h5ads/02faf712-92d4-458...	Renal cell carcinoma, pre aPD1, kidney Puck_20...	.h5ad	NaN	AnnData	1.399786e+07	YNYuokfAoDFxdaRILjmU9w	NaN	17612.0	...	True	False	2024-12-02 08:57:19.308058+00:00	1	1	1	16	361	NaN	30
1010	dP0F1fEQWtorhDaI0000	example_datasets/small_dataset2.h5ad	NaN	.h5ad	dataset	AnnData	2.122400e+04	7ok_2cIe73owydEGaj7m0A	NaN	3.0	...	True	False	2024-11-25 14:59:38.945319+00:00	1	1	1	2	302	NaN	9
1009	mKo82UispVElpGtP0000	example_datasets/small_dataset1.h5ad	NaN	.h5ad	dataset	AnnData	2.335200e+04	NYni1vTRM7pqfle8ufPZwQ	NaN	3.0	...	False	False	2024-11-25 14:59:09.484279+00:00	1	1	1	2	302	NaN	9
938	3TNCsZZcnIBv2WGb0001	NaN	10x reference adata, trusted cell type annotation	.h5ad	dataset	AnnData	8.516640e+05	iETHP3Lw-tVqZxYAuEC-SA	NaN	70.0	...	True	False	2024-10-18 21:46:55.467982+00:00	1	1	1	2	305	NaN	9
937	3TNCsZZcnIBv2WGb0000	NaN	10x reference adata	.h5ad	dataset	AnnData	8.598400e+05	MAjl6lrjrcjqhUUA0ixMKA	NaN	70.0	...	False	False	2024-10-18 21:45:46.636210+00:00	1	1	1	2	305	NaN	9
750	PrHBuKLflU03CeI2xNPJ	NaN	10x reference adata	.h5ad	NaN	AnnData	8.577520e+05	c9ukVXVfpdaH2BWaqBfK4g	NaN	70.0	...	True	False	2024-06-26 10:00:08.928727+00:00	1	1	1	2	209	NaN	2
725	CFcQxNjzSRzWZrVhBk65	NaN	Kuppe 2022, ATAC	.anndata.zarr	NaN	AnnData	2.883708e+09	cqrk4idQ_WGjTe6KBrIKgg	2799.0	NaN	...	True	False	2024-06-05 10:21:25.684256+00:00	1	1	1	2	181	NaN	2
708	ytL7CXi5peqhfSPNSFVG	NaN	Kuppe 2022, RNA	.anndata.zarr	NaN	AnnData	3.107879e+09	tMzcoJ_1iz4Zsdvr-sjt6A	3380.0	NaN	...	True	False	2024-06-26 10:00:29.405916+00:00	1	1	1	2	181	NaN	2
706	psrHlYkmysrxtAL3RBTo	NaN	Kuppe 2022, Visium adata	.anndata.zarr	NaN	AnnData	6.510761e+07	WN5GxCkcKeO5UElDZ2IA0A	206.0	NaN	...	True	False	2024-06-04 12:33:00.419035+00:00	1	1	1	2	181	NaN	2

20 rows × 22 columns

By features

The Feature registry indexes variables across datasets to enable querying by dimensions. Registry fields couldn’t scale to millions of dimensions as found in biology:

The Artifact, Record, and Run registries can be queried by feature expressions:

feature_type = db.Feature.get(name="mini_immuno")
perturbation = db.Feature.get(name="perturbation", type=feature_type)
temperature = db.Feature.get(name="temperature")
db.Artifact.filter(
    perturbation == "DMSO",
    temperature > 21,
).to_dataframe(include="features")

Show code cell output Hide code cell output

	uid	key	perturbation	cell_type_by_model	assay_oid	temperature
id
11925	AsTXi6hzDFM7L17t0003	examples/mini_immuno_with_single_typo.parquet	{IFNG, DMSO}	{T cell, B cell}	EFO:0008913	21.6

You can query for whether a dataset is annotated by a feature:

db.Artifact.filter(perturbation.is_null(False)).to_dataframe(include="features")

Show code cell output Hide code cell output

	uid	key	perturbation	cell_type_by_model	assay_oid	temperature
id
11925	AsTXi6hzDFM7L17t0003	examples/mini_immuno_with_single_typo.parquet	{IFNG, DMSO}	{T cell, B cell}	EFO:0008913	21.6

Cheat sheet: comparators

You can qualify the type of comparison in a query by using a comparator. Below is a list of the most important ones, but Django supports about two dozen field comparators field__comparator=value.

and

db.Artifact.filter(suffix=".h5ad", records=experiment_1).to_dataframe()

Show code cell output Hide code cell output

	uid	id	key	description	suffix	kind	otype	size	hash	n_files	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id

0 rows × 23 columns

less than/ greater than

# artifacts greater than 10kB
db.Artifact.filter(size__gt=1e4).to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
30656	Shd8DEzRucu3Xvdc0001	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	3.433000e+04	LyV1nemOxss-GcvMhaTWlA	None	NaN	...	True	False	2026-08-22 18:56:19.059415+00:00	1	1	1	2	13753	None	9
30653	Shd8DEzRucu3Xvdc0000	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	3.997100e+04	BGa0TB6WTWMsss9ppxWUUw	None	NaN	...	False	False	2026-08-22 18:53:54.778547+00:00	1	1	1	2	13751	None	9
30651	L1HGZu8CMlrrxACm0003	laminprofiler/duration_vs_time_import_lamindb_...	duration_in_sec vs. time — init	.svg	NaN	NaN	3.997100e+04	5V2k7GONKqH1vVa73eW-BQ	None	NaN	...	True	False	2026-08-22 18:51:50.828812+00:00	1	1	1	2	13750	None	9
29991	KKfGLmFwvmSb56H50000	NaN	Embedded asset	.png	__easset__	NaN	3.495520e+05	T1sjyK0wVl5t_Ibr1lpqNw	None	NaN	...	True	False	2026-08-17 11:17:07.925399+00:00	1	1	1	2	NaN	None	46
29921	iVxey5KAwg69PrSz0000	esc_ipsc/heatmap_top50.png	Clustered heatmap of top-50 DE genes (by padj)...	.png	NaN	NaN	3.123520e+05	IuoQ-te-jQXthkk5Qr0E8w	None	NaN	...	True	False	2026-08-16 10:39:12.555464+00:00	1	1	1	2	13184	None	60
29920	rBcRShqxKX33I33l0000	esc_ipsc/volcano_plot.png	Volcano plot: log2FC vs -log10 padj (ESC vs iPSC)	.png	NaN	NaN	1.187300e+05	XMRsdEIO8ZQ-KjBY1jvlhA	None	NaN	...	True	False	2026-08-16 10:39:10.936477+00:00	1	1	1	2	13184	None	60
29918	ovdxb8SwOs10PLnQ0000	esc_ipsc/counts.csv	Raw gene-level counts matrix (gene_id x sample...	.csv	NaN	DataFrame	2.632050e+06	8D5m-Qbtdy3iKzSnYSK4jA	None	NaN	...	True	False	2026-08-16 10:38:29.011279+00:00	1	1	1	2	13183	None	60
29676	QIKiDBZTSpmEhkOo0000	NaN	Embedded asset	.png	__easset__	NaN	3.061170e+05	FowJyxPuUJwhghAAm2Y5UQ	None	NaN	...	True	False	2026-08-12 09:37:35.546038+00:00	1	1	1	2	NaN	None	46
29414	NitV7fumJa6TPlJg0000	esc_ipsc/deseq2_results.csv	PyDESeq2 results table (ESC vs iPSC), sorted b...	.csv	NaN	DataFrame	4.792375e+06	i5v_KsCea-DJgqOmtRexcw	None	NaN	...	True	False	2026-08-09 19:15:56.482422+00:00	1	1	1	2	13165	None	60
29405	L1HGZu8CMlrrxACm0002	laminprofiler/duration_vs_time_import_lamindb_...	duration_in_sec vs. time — import_lamindb_setup	.svg	NaN	NaN	1.674770e+05	MPwecXMw5ffm7PcNAfOpRQ	None	NaN	...	False	False	2026-08-08 08:59:53.362823+00:00	1	565	1	2	12782	None	9
29404	L1HGZu8CMlrrxACm0001	laminprofiler/duration_vs_time_import_lamindb_...	duration_in_sec vs. time — import_lamindb_setup	.svg	NaN	NaN	1.674770e+05	g8ypIRrdrMGbGbiUjlErJg	None	NaN	...	False	False	2026-08-08 08:58:22.233098+00:00	1	565	1	2	12780	None	9
29330	f5ziBE16S6cgCcAa0000	cell-census/2025-11-17/h5ads/b57462e3-1df5-463...	Spinal cord dataset	.h5ad	NaN	AnnData	8.385448e+08	ea9CevFem3KDHVmKcwAstg	None	62711.0	...	True	False	2026-08-07 10:18:36.374154+00:00	1	1	1	64	12723	None	60
29329	ipr0Yru8t2EUWI6W0000	cell-census/2025-11-17/h5ads/e2a00644-0a48-481...	Brain dataset	.h5ad	NaN	AnnData	1.034128e+09	qmO4ws35SfmhDFjTPt04CQ	None	75583.0	...	True	False	2026-08-07 10:18:35.132493+00:00	1	1	1	64	12723	None	60
29327	VlKotQI94fi5ZeE30000	cell-census/2025-11-08/h5ads/001b01fe-5c70-4bd...	WSSS_F_IMMsp10864183	.h5ad	NaN	AnnData	1.591353e+08	h0WE90MKphz5C2-yEv0wDA	None	4992.0	...	True	False	2026-08-07 10:17:56.973553+00:00	1	1	1	16	12722	None	60
29326	8pdGUzaPNtolFIdF0000	cell-census/2025-11-08/h5ads/00099d5e-154f-4a7...	Spatial transcriptomics in mouse: Puck_191206_04	.h5ad	NaN	AnnData	1.649709e+07	zPOKGUYq66NbshPtZ-I08g	None	26239.0	...	True	False	2026-08-07 10:17:56.084912+00:00	1	1	1	16	12722	None	60
29176	mNXum9KZQQbkgWTq0000	datasets/sales/synthetic_sales.csv	Synthetic transactional sales dataset generate...	.csv	NaN	DataFrame	1.544440e+05	mVX-CZ3SHYpI-9VPjR7DrA	None	NaN	...	True	False	2026-08-06 14:24:49.526600+00:00	1	1	1	2	12615	None	76
29075	gcdtMgwa9e9S9UVp0001	gwas/raw/raw_gwas_data.csv	Raw GWAS input table with sample metadata and ...	.csv	dataset	DataFrame	5.335200e+04	hFbns715lnEw775gRGjd9w	None	250.0	...	True	False	2026-08-05 18:04:31.882621+00:00	1	682	1	2	NaN	None	46
29031	TR7rauYoGbe3zuQ50000	figures/churn_rate_by_region.png	Bar chart of churn rates by region	.png	NaN	NaN	3.291800e+04	LmIand9bIihhMFokeroxVw	None	NaN	...	True	False	2026-08-05 16:13:15.641407+00:00	1	1	1	2	12537	None	76
29027	sDWtv2aElra5VtR40000	datasets/customer_churn_synthetic.csv	Synthetic customer churn dataset with region a...	.csv	NaN	DataFrame	1.019200e+04	depLWDgoATG5Tc5LHJwORw	None	NaN	...	True	False	2026-08-05 16:11:55.598858+00:00	1	1	1	2	12535	None	76
29021	NINEoAFwQoRhxCuc0000	gwas_pipeline/visualization/qq_plot.png	Q-Q plot	.png	NaN	NaN	5.937400e+04	m5EwTtf8JO5e6MawECUEFA	None	NaN	...	True	False	2026-08-05 15:20:27.921251+00:00	1	1	1	2	12532	None	46

20 rows × 22 columns

in

db.Artifact.filter(suffix__in=[".jpg", ".fastq.gz"]).to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
28185	7AffjOdqFRIVgpTZ0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.981608e+06	mmP1JptCPyMLs5sK5sfG3g	None	None	...	True	False	2026-08-03 02:15:14.978778+00:00	1	1	1	42	NaN	None	18
28184	RQzzsn8f04rpVHBQ0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	7.376530e+05	lF1s_gl9HqRjDnUghMEBUA	None	None	...	True	False	2026-08-03 02:15:14.179540+00:00	1	1	1	42	NaN	None	18
28183	hQIafmTUYTCu6U380000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	4.259756e+06	YAoFK35Aq8NbG3yELgfLpQ	None	None	...	True	False	2026-08-03 02:15:13.293893+00:00	1	1	1	42	NaN	None	18
28175	DZ2ZlIMHandyStjk0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.727503e+06	tN8WWL5aSoWSIk9aU1fvLg	None	None	...	True	False	2026-08-03 02:15:09.923273+00:00	1	1	1	42	NaN	None	18
28171	aWk4SGRJG9HbRcHj0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	4.259756e+06	YAoFK35Aq8NbG3yELgfLpQ	None	None	...	True	False	2026-08-03 02:14:55.191667+00:00	1	1	1	42	NaN	None	18
28170	xY5RtGF79GvK6Ems0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.727503e+06	tN8WWL5aSoWSIk9aU1fvLg	None	None	...	True	False	2026-08-03 02:14:54.229481+00:00	1	1	1	42	NaN	None	18
27412	WC1CAMYuqRdf3FP30000	test-data/scrnaseq/pbmc8k_S1_L008_R2_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	2.939891e+10	3QmwtB-_YgQk3KzcKo9aKg	None	None	...	True	False	2026-07-23 07:40:52.023603+00:00	1	1	1	63	NaN	None	54
27411	Isd2IJe9wLX3as4v0000	test-data/scrnaseq/pbmc8k_S1_L008_R1_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	7.675472e+09	MdnZwaVvedac8R-Qu-WBLg	None	None	...	True	False	2026-07-23 07:40:50.648530+00:00	1	1	1	63	NaN	None	54
27410	tUURaCPj0LOUe7gh0000	test-data/scrnaseq/pbmc8k_S1_L007_R2_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	2.955347e+10	Te3tftzOgMl5vnmtx3kKvg	None	None	...	True	False	2026-07-23 07:40:49.213511+00:00	1	1	1	63	NaN	None	54
27409	KXEPPbhLhdvNu4ja0000	test-data/scrnaseq/pbmc8k_S1_L007_R1_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	7.725840e+09	iU6K3QJoo5pPp9peYmFedQ	None	None	...	True	False	2026-07-23 07:40:47.659248+00:00	1	1	1	63	NaN	None	54
26631	qGXvU8SFFsQclgR10000	Uploads/iris-0337d20a3b7273aa0ddaa7d6afb57a37a...	NaN	.jpg	NaN	None	1.452900e+04	e0Gct8LodEyQzNwy1glOPA	None	None	...	True	False	2026-07-14 14:51:33.166215+00:00	1	1	1	2	NaN	None	46
23623	siAj6EUthWF8gs2S0000	temp/output/fetchngs/fastq/SRX9315476_SRR12848...	Output artifact for run 8541	.fastq.gz	dataset	None	1.234670e+05	A_WjRYau-c1h9U6yaDGmZQ	None	None	...	True	False	2026-06-01 09:38:35.976330+00:00	1	1	1	59	8541	None	54
23622	F9Tn8DfxnBPGtssK0000	temp/output/fetchngs/fastq/SRX9315476_SRR12848...	Output artifact for run 8541	.fastq.gz	dataset	None	1.315390e+05	l3AcXYhK-NlrqV1yN_O_eQ	None	None	...	True	False	2026-06-01 09:38:31.103701+00:00	1	1	1	59	8541	None	54
23621	FtiwkNxd0Ila7VWx0000	temp/output/fetchngs/fastq/SRX11047067_SRR1470...	Output artifact for run 8541	.fastq.gz	dataset	None	1.500000e+02	eRQN0cs_0cXgLYjgH3w-2g	None	None	...	True	False	2026-06-01 09:38:26.673415+00:00	1	1	1	59	8541	None	54
23620	Xh881SEOzEhkxVBh0000	temp/output/fetchngs/fastq/SRX10940790_SRR1459...	Output artifact for run 8541	.fastq.gz	dataset	None	4.730000e+02	y9MHFf3vRX16okoS8Z7t8g	None	None	...	True	False	2026-06-01 09:38:22.275334+00:00	1	1	1	59	8541	None	54
23619	U4GV6WjzB72LJJNy0000	temp/output/fetchngs/fastq/SRX10940790_SRR1459...	Output artifact for run 8541	.fastq.gz	dataset	None	4.590000e+02	akdizw8fn1VE03NeLgfF0w	None	None	...	True	False	2026-06-01 09:38:18.479607+00:00	1	1	1	59	8541	None	54
23617	1YEM2Tzio0JpaPke0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.149070e+05	WtUUYMbEqFDdN6IG4sRBwQ	None	None	...	True	False	2026-06-01 09:37:53.956200+00:00	1	1	1	59	8541	None	54
23616	8DhYtWgZJO545TJo0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.217050e+05	qXc2e_QdrPTCG8DIIBuLiA	None	None	...	True	False	2026-06-01 09:37:39.002608+00:00	1	1	1	59	8541	None	54
23615	NgZujyEK9KmFMlFK0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.176930e+05	XsiU2GP87-OURwoJJa795A	None	None	...	True	False	2026-06-01 09:37:29.243127+00:00	1	1	1	59	8541	None	54
23614	rLzlXSOpP8o1piIs0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.168620e+05	w_NDeTVrKNbaxyEqvBoKBA	None	None	...	True	False	2026-06-01 09:37:24.188066+00:00	1	1	1	59	8541	None	54

20 rows × 22 columns

order by

db.Artifact.filter().order_by("created_at").to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
1	WGDHevIgEDPJ6CB99foT	Data-objects/tabula-muris-senis-facs-processed...	tabula-muris-senis-facs-processed-official-ann...	.h5ad	None	NaN	4.795677e+09	NaN	None	None	...	True	False	2023-04-24 18:16:32.313696+00:00	1	1	1	8	1	None	9
2	0PsCY8SjhD1FIqw9e99v	paradisi05.jpg	paradisi05.jpg	.jpg	None	NaN	2.935800e+04	r4tnqmKI_SjrkdLzpuWp4g	None	None	...	True	False	2023-05-11 17:27:12.479874+00:00	1	1	1	2	6	None	2
3	1YOa919kJFXzvgfmq4Pv	alignment_result.bam	alignment_result.bam	.bam	None	NaN	1.400000e+01	rGSwtSEKB65DaaQq740p6A	None	None	...	True	False	2023-05-11 17:27:22.895303+00:00	1	1	1	2	6	None	2
4	DoI5k2zRvBdI29OO7vGu	alignment_result.fastq.gz	alignment_result.fastq.gz	.fastq.gz	None	NaN	1.600000e+01	QDkCIyDtWe8tlrS9zG8gnw	None	None	...	True	False	2023-05-11 17:29:35.872683+00:00	1	1	1	2	6	None	2
7	ODQVll1jtwfvv1lQwyw3	NaN	human immune cells	.h5ad	None	NaN	6.094764e+07	6QUqNaIQurw-HLIkXg9_1w	None	None	...	True	False	2023-05-17 07:27:10.961723+00:00	1	1	1	2	6	None	2
8	SAPKv9zC4hBmXsHvdReg	NaN	scRNA-seq mouse lymph_node	.h5ad	None	NaN	1.734124e+07	Qprqj0O23197Ko-VobaZiw	None	None	...	True	False	2023-05-17 07:29:20.858230+00:00	1	1	1	2	6	None	2
9	myPxexSQMW3Xrdz5C31U	NaN	scRNA-seq pbmc3k processed	.h5ad	None	NaN	4.021251e+07	8uy3ub-USOUcnkFEw5UzzA	None	None	...	True	False	2023-05-17 07:34:56.434082+00:00	1	1	1	2	6	None	2
10	YdTtu9TBPYe6ov1ItOVK	NaN	scRNA-seq pbmc68k reduced	.h5ad	None	NaN	6.384840e+05	-QNUPBbAug3jFmmk3fsOQA	None	None	...	True	False	2023-05-17 07:37:43.536825+00:00	1	1	1	2	6	None	2
16	i8iBR6gPn7NIvxwgjyxD	NaN	Human Lung Cell Atlas (core)	.h5ad	None	NaN	6.024042e+09	-B4rkeu0-NKqWVpJqPq6aX	None	None	...	True	False	2023-07-14 12:48:12.378063+00:00	1	1	1	2	24	None	5
18	dPraor9rU1EofcFb6Wph	tabula_sapiens_lung.h5ad	Part of Tabula Sapiens, a benchmark, first-dra...	.h5ad	None	NaN	3.899436e+09	8mB1KK2wd51F6HQdvqipcQ	None	None	...	True	False	2023-07-14 19:00:30.621330+00:00	1	1	1	2	9	None	3
21	uAAHUIGb13zvUYkMRsGR	schmidt22/schmidt22_merged.h5ad	CRISPRa Perturb-seq of primary human T cells	.h5ad	None	NaN	3.155686e+09	gJcjALISed0J5OhSmEDJ2v	None	None	...	True	False	2023-07-14 19:58:17.360062+00:00	1	1	1	2	30	None	6
22	JQjRzDBw2OLQ5XLbhtUg	NaN	schmidt22_data/Genome-wide-screens/data/gene_s...	.parquet	None	NaN	1.242827e+06	2XQbncQ48h4kczkYd95lZQ	None	None	...	True	False	2023-07-15 12:30:06.020349+00:00	1	1	1	2	30	None	6
23	wukqLbKCfN6xXuzwcbW2	NaN	schmidt22_data/Genome-wide-screens/data/gene_s...	.parquet	None	NaN	1.203729e+06	ebsJsQG1xyr1Rfurc5UShw	None	None	...	True	False	2023-07-15 12:30:10.051671+00:00	1	1	1	2	30	None	6
24	GDHZJ99oQDiPsS7o8GSl	NaN	schmidt22_data/Genome-wide-screens/data/gene_s...	.parquet	None	NaN	1.222490e+06	5G4M1Qw2Kqj69w28Z6_YBA	None	None	...	True	False	2023-07-15 12:30:13.575614+00:00	1	1	1	2	30	None	6
25	9Gw50HQnl2vYyzWOpOvx	NaN	schmidt22_data/Genome-wide-screens/data/gene_s...	.parquet	None	NaN	1.246652e+06	CsEMn21jx3ooCzuN1bokHw	None	None	...	True	False	2023-07-15 12:30:17.140265+00:00	1	1	1	2	30	None	6
346	OYMsfQft74x86KVv0000	fasta/PO5F1.fasta	NaN	.fasta	None	NaN	4.770000e+02	-7iJgveFO9ia0wE1bqVu6g	None	None	...	True	False	2023-09-19 13:22:31.901870+00:00	1	1	1	2	NaN	None	9
412	6cZkqq35HhC4SXoz0000	fasta/MYC.fasta	NaN	.fasta	None	NaN	5.360000e+02	WGbEtzPw-3bQEGcngO_pHQ	None	None	...	True	False	2023-09-19 13:22:32.163643+00:00	1	1	1	2	NaN	None	9
413	dWps4Flwk1SYHIP00000	fasta/SOX2.fasta	NaN	.fasta	None	NaN	4.140000e+02	C5q_yaFXGk4SAEpfdqBwnQ	None	None	...	True	False	2023-09-19 13:22:32.419702+00:00	1	1	1	2	NaN	None	9
414	5Kw7XSsF6jRKiUe60000	fasta/KLF4.fasta	NaN	.fasta	None	NaN	6.090000e+02	LyuoYkWs4SgYcH7P7JLJtA	None	None	...	True	False	2023-09-19 13:22:32.679683+00:00	1	1	1	2	NaN	None	9
383	Ff4XZtm6Lko0Fz3ysIEl	NaN	10x reference adata	.h5ad	None	AnnData	6.607920e+05	TRHLp5EVjDGdv7DufMAnmg	None	None	...	True	False	2023-10-04 13:19:07.817861+00:00	1	1	1	2	33	None	2

20 rows × 22 columns

# reverse ordering
db.Artifact.filter().order_by("-created_at").to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
31441	N2N25ecPjU1uhIRN0000	fasta/cytochrome_c_human_aa_frequencies.parquet	Amino-acid composition analysis of human cytoc...	.parquet	dataset	DataFrame	2946.0	arOXbnDIa8lATHRFYegTfQ	None	20.0	...	True	False	2026-09-08 22:10:17.518495+00:00	1	1	1	2	14388	None	76
31438	x7gkzDW9dDIXjMgF0000	fasta/cytochrome_c_human.fasta	Human cytochrome c (CYCS, UniProt P99999) prot...	.fasta	NaN	NaN	183.0	6rYbxRvZr5LftJaBZ3Ltaw	None	NaN	...	True	False	2026-09-08 22:08:58.275001+00:00	1	1	1	2	14387	None	76
31415	W3q98o3Rxv5wxiS40000	NaN	mix-test	.txt	NaN	NaN	62.0	xMtGxadDGhAvlDQKmNJ_ZA	None	NaN	...	True	False	2026-09-08 20:30:51.088739+00:00	1	1	1	2	NaN	None	3
31414	Uu0CthUXD2BP4MMr0000	NaN	upload2	.txt	NaN	NaN	54.0	wzKrXgQvmWqiM4yGu9uEOA	None	NaN	...	True	False	2026-09-08 20:23:51.195724+00:00	1	1	1	2	NaN	None	3
31410	ud8k72RyfgQ1nWYE0000	NaN	check upload	.txt	NaN	NaN	45.0	IHTGvkKqzNPWo5dcubvmvw	None	NaN	...	True	False	2026-09-08 19:41:22.287573+00:00	1	1	1	2	NaN	None	3
31264	g1uMDs0pD0YOqv570000	proteins/favorite_protein.fasta	Human lysozyme C (P61626) sequence in FASTA fo...	.fasta	NaN	NaN	164.0	GAIdBieLvpawYHF9RVeAWA	None	NaN	...	True	False	2026-09-07 06:24:31.330992+00:00	1	1	1	2	14262	None	18
31261	lr9Dzpx1ikjncS6B0000	proteins/protein.fasta	avGFP (P42212) amino acid sequence in FASTA fo...	.fasta	NaN	NaN	310.0	FAicO7EuYVgg-fbnIhS0Dw	None	NaN	...	True	False	2026-09-07 06:23:47.778386+00:00	1	1	1	2	14260	None	18
31259	Vrp32G5NMTMNLA8C0000	NaN	Green fluorescent protein (GFP) sequence	.fasta	NaN	NaN	288.0	fiZX67uu9zP_AECYfjmWgQ	None	NaN	...	True	False	2026-09-07 06:23:14.043343+00:00	1	1	1	2	14258	None	18
30656	Shd8DEzRucu3Xvdc0001	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	34330.0	LyV1nemOxss-GcvMhaTWlA	None	NaN	...	True	False	2026-08-22 18:56:19.059415+00:00	1	1	1	2	13753	None	9
30653	Shd8DEzRucu3Xvdc0000	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	39971.0	BGa0TB6WTWMsss9ppxWUUw	None	NaN	...	False	False	2026-08-22 18:53:54.778547+00:00	1	1	1	2	13751	None	9
30651	L1HGZu8CMlrrxACm0003	laminprofiler/duration_vs_time_import_lamindb_...	duration_in_sec vs. time — init	.svg	NaN	NaN	39971.0	5V2k7GONKqH1vVa73eW-BQ	None	NaN	...	True	False	2026-08-22 18:51:50.828812+00:00	1	1	1	2	13750	None	9
30305	TeERjy0Nt2yY3Cr00000	sheet_exports/Experiments.csv	Export of sheet fNBzuANAusnkFv2p: Our experime...	.csv	dataset	DataFrame	125.0	no__3ZZD0t_AgOMO91saUg	None	3.0	...	True	False	2026-08-20 10:36:31.440148+00:00	1	1	1	2	13478	None	46
29994	fzIkx9MnWq6GVhBj0000	math/powers_of_4_first_10.txt	Text file listing the first 10 powers of 4	.txt	NaN	NaN	110.0	wFhHIH5JbLZS0o0_E0Dx1g	None	NaN	...	True	False	2026-08-17 11:30:32.142793+00:00	1	1	1	2	13237	None	76
29992	Y4MKT5zj0Fzl6swK0000	outputs/powers_of_3.txt	First 10 powers of 3 (3^1 through 3^10)	.txt	NaN	NaN	101.0	fwGZaFBn16u6wbqF-A2TzQ	None	NaN	...	True	False	2026-08-17 11:28:53.844630+00:00	1	1	1	2	13236	None	76
29991	KKfGLmFwvmSb56H50000	NaN	Embedded asset	.png	__easset__	NaN	349552.0	T1sjyK0wVl5t_Ibr1lpqNw	None	NaN	...	True	False	2026-08-17 11:17:07.925399+00:00	1	1	1	2	NaN	None	46
29974	VPpPBvk1EiMoEZJD0000	datasets/math/fib30_workflow/parity.json	Even/odd check of the sum of the first 30 Fibo...	.json	NaN	NaN	40.0	28ZpUqGu3SW9KITScUTJFA	None	NaN	...	True	False	2026-08-17 09:57:07.284293+00:00	1	1	1	2	13225	None	76
29972	R7Hq7dALjxOKQJOX0000	datasets/math/fib30_workflow/sum.json	Sum of the first 30 Fibonacci numbers.	.json	NaN	NaN	20.0	JvZGFprq7qx699-J3O_H5g	None	NaN	...	True	False	2026-08-17 09:56:53.848403+00:00	1	1	1	2	13224	None	76
29970	W6Rs8HwG4l9VtThv0000	datasets/math/fib30_workflow/numbers.json	First 30 Fibonacci numbers.	.json	NaN	NaN	300.0	qQyW0dtcPdhKbcqjqUVG7A	None	NaN	...	True	False	2026-08-17 09:56:37.938618+00:00	1	1	1	2	13223	None	76
29921	iVxey5KAwg69PrSz0000	esc_ipsc/heatmap_top50.png	Clustered heatmap of top-50 DE genes (by padj)...	.png	NaN	NaN	312352.0	IuoQ-te-jQXthkk5Qr0E8w	None	NaN	...	True	False	2026-08-16 10:39:12.555464+00:00	1	1	1	2	13184	None	60
29920	rBcRShqxKX33I33l0000	esc_ipsc/volcano_plot.png	Volcano plot: log2FC vs -log10 padj (ESC vs iPSC)	.png	NaN	NaN	118730.0	XMRsdEIO8ZQ-KjBY1jvlhA	None	NaN	...	True	False	2026-08-16 10:39:10.936477+00:00	1	1	1	2	13184	None	60

20 rows × 22 columns

db.Artifact.filter().order_by("key").to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
12636	35ObjdYJlHtNB3bX0000	None	Output artifact for run 1770	.json	NaN	NaN	80.0	FgHcIsT7rT3ofLeWhiYEGQ	None	None	...	True	False	2026-01-12 07:51:02.590141+00:00	1	1	1	2	1770	None	18
1282	WQtsc0CQZKB9GEst0000	None	Example R cars dataset	.parquet	dataset	DataFrame	2402.0	eIk8NXNiwMoGmhhjrMILbg	None	None	...	True	False	2025-01-15 14:22:51.192955+00:00	1	1	1	2	460	None	30
12637	DlI6q1KyYwXa8JDg0000	None	Output artifact for run 1771	.json	NaN	NaN	80.0	_0FUb8Xz9Ly79tXBJUpSmw	None	None	...	True	False	2026-01-12 07:51:09.479761+00:00	1	1	1	2	1771	None	18
12635	Hd09etkjOsgvX1JA0000	None	test		NaN	NaN	3949.0	i9NhjVeKePm4-48opDt7xw	None	None	...	True	False	2026-01-07 17:47:05.361341+00:00	1	1	1	2	NaN	None	3
1339	6gX0kYoaGMkxzcGU0000	None	Marker genes for renal cell carcinoma dataset	.parquet	dataset	DataFrame	6456.0	qc88qFiDolluPt8YIiSq_g	None	None	...	True	False	2025-02-17 12:48:31.963510+00:00	1	1	1	2	462	None	30
20756	qCEizASjJg7lfbDO0000	None	CSV upload test efba5645	.csv	NaN	DataFrame	40.0	du-FuXzpOCU4K0RlIEmuBw	None	None	...	True	False	2026-04-25 05:45:13.307128+00:00	1	1	1	2	6838	None	18
12638	GblMs81hx8QGJCen0000	None	Output artifact for run 1774	.json	NaN	NaN	80.0	C8bX81iEj2UbtzSvgAfpqA	None	None	...	True	False	2026-01-12 09:03:31.964983+00:00	1	1	1	2	1774	None	18
1484	TK9vvBJUDzDAjhWl0000	None	adme_dataset_test	.sdf	NaN	NaN	4789857.0	yS_cv8YsScZqJXfLkU_Uzg	None	None	...	True	False	2025-04-12 16:08:52.747861+00:00	1	1	1	2	NaN	None	37
607	sRapK07mMtToihzFeTaf	None	View Papalexi21 in Vitessce	.vitessce.json	NaN	NaN	1527.0	jfAtjNNzdvetUaEo5zhf0Q	None	None	...	True	False	2024-04-30 12:51:16.348884+00:00	1	1	1	2	141	None	2
726	HXJ4DDAw8012jVKwoxgd	None	View Kuppe2022 in Vitessce	.vitessce.json	NaN	NaN	5258.0	JsVK8X8EGRsyTEMnD3Z-6g	None	None	...	True	False	2024-06-26 10:35:31.697669+00:00	1	1	1	2	198	None	2
932	NDOlPsxP59pEWbbE0000	None	test-rename	.parquet	dataset	DataFrame	2380.0	78-cWLRn4ckaWn5wZs4TYw	None	None	...	True	False	2024-10-18 13:14:52.522736+00:00	1	1	1	2	301	None	2
12639	PpMSbCxoLwAKjIxO0000	None	Output artifact for run 1775	.json	NaN	NaN	80.0	N5jn7KqL-txKLk8zAaa-jw	None	None	...	True	False	2026-01-12 09:03:41.465518+00:00	1	1	1	2	1775	None	18
12640	ItAg10VDzxLJoz820000	None	Output artifact for run 1778	.json	NaN	NaN	80.0	ceQOS7lNBEaIfZuFbg-zRA	None	None	...	True	False	2026-01-12 10:46:19.452302+00:00	1	1	1	2	1778	None	18
16971	hTZCRq1NIXdlXrbV0000	None	Upload test ecec7867	.txt	NaN	NaN	56.0	cYIADRgtkcKovZbPdDLcxw	None	None	...	True	False	2026-03-14 05:28:27.330185+00:00	1	1	1	2	NaN	None	18
12641	5GrpFuIwFUd29UD30000	None	Output artifact for run 1779	.json	NaN	NaN	80.0	-dLO-WyZerW6RWf_zD_2cw	None	None	...	True	False	2026-01-12 10:46:28.787149+00:00	1	1	1	2	1779	None	18
865	xqcaHbOU2jTohiwi0000	None	my RNA-seq	.parquet	dataset	DataFrame	4091.0	PV-3u9wm_rq35o6J8d5A5w	None	None	...	True	False	2024-09-24 13:10:10.580062+00:00	1	1	1	2	260	None	9
996	Xr8OgqkMM78cPpTY0000	None	Marker genes for renal cell carninoma dataset	.parquet	dataset	DataFrame	71299.0	qT2DWTxxXPDYER6WKVn05Q	None	None	...	True	False	2024-11-22 14:33:53.803326+00:00	1	1	1	2	342	None	28
12765	1AwziZKdEj2IXwWo0000	None	Output artifact for run 1859	.json	NaN	NaN	80.0	ndKHofUZnRSIP0-zFx9D8g	None	None	...	True	False	2026-01-15 05:15:09.053471+00:00	1	1	1	2	1859	None	18
12642	ofOwUan29TR1WbhW0000	None	Output artifact for run 1782	.json	NaN	NaN	80.0	XJZRUFXtNNQ7wL1cqs476g	None	None	...	True	False	2026-01-12 11:02:56.517095+00:00	1	1	1	2	1782	None	18
20576	tNa9JwfjVo3n9peM0000	None	CSV upload test c1bf706e	.csv	NaN	DataFrame	40.0	sjI9d7jzpuL5vn9f7Ey6pg	None	None	...	True	False	2026-04-23 12:07:52.787528+00:00	1	1	1	2	6746	None	18

20 rows × 22 columns

# reverse ordering
db.Artifact.filter().order_by("-key").to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
1392	KFhRNPqcdoxBCNZt0000	xenium_aligned_2_guide_min.zarr	NaN	.zarr	dataset	SpatialData	4.082240e+07	BByzNgmQLwel85gqCO3mFw	174.0	None	...	False	False	2025-03-25 18:18:47.973259+00:00	1	1	1	2	544	None	6
1403	KFhRNPqcdoxBCNZt0001	xenium_aligned_2_guide_min.zarr	NaN	.zarr	dataset	SpatialData	4.082231e+07	oH569Lh4koYRB1I6AatnGQ	174.0	None	...	True	False	2025-03-26 15:15:49.153243+00:00	1	1	1	2	546	None	6
1391	kVMuYil81BHTwQ9G0000	xenium_aligned_1_guide_min.zarr	NaN	.zarr	dataset	SpatialData	3.511540e+07	texqoOnX5OgqxMWd6gF6Ww	145.0	None	...	False	False	2025-03-25 18:18:16.374973+00:00	1	1	1	2	544	None	6
1402	kVMuYil81BHTwQ9G0001	xenium_aligned_1_guide_min.zarr	NaN	.zarr	dataset	SpatialData	3.511530e+07	8f1qC6IkpSvFw2H8TdhplQ	145.0	None	...	True	False	2025-03-26 15:15:13.756370+00:00	1	1	1	2	546	None	6
1326	8sPWscz3SICG1D8t0000	xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE_o...	NaN	.zarr	NaN	spatialdata	6.952541e+09	LququnPo8WKQBQmgbkTiOg	1105.0	None	...	False	False	2025-02-11 10:20:24.518854+00:00	1	1	1	2	489	None	2
12608	8sPWscz3SICG1D8t0001	xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE_o...	NaN	.zarr	NaN	spatialdata	7.045223e+09	jgalhtHw00CzuZA_jrTygw	1457.0	None	...	True	False	2025-12-16 14:14:28.067901+00:00	1	1	1	2	NaN	None	40
12760	KtgQShCvwLqTeUab0000	vitessce_examples/xenium/2.0.0/Xenium_V1_human...	Xenium_V1_humanLung_Cancer_FFPE_he_image offse...	.json	NaN	NaN	4.000000e+00	hisagMLiCNBl8wqyGenU7g	NaN	None	...	True	False	2026-01-14 14:31:44.438921+00:00	1	1	1	2	NaN	None	40
12857	Z1Q9alE7dBr5lZty0000	vitessce_examples/visium.sdata.zarr	Visium SpatialData Example	.zarr	dataset	SpatialData	1.473182e+09	iDvq8-aqbbY8EBA1QCoMzw	9170.0	None	...	True	False	2026-01-20 19:53:35.630352+00:00	1	1	1	2	1933	None	40
12858	dYRJon1HZoJuWhz80000	vitessce_examples/visium.ome.zarr	Visium OME-Zarr Example	.ome.zarr	dataset	SpatialData	1.400252e+09	LNdpQjV21yjPlL8hgJW6dA	8809.0	None	...	True	False	2026-01-20 20:00:29.408312+00:00	1	1	1	2	1933	None	40
12853	cyzNRxkUQF1sMVrr0000	vitessce_examples/habib17.reference.json	Reference JSON for H5AD file, Habib et al., 20...	.json	NaN	NaN	5.435750e+05	XFOV2X6Bw6_zTugTOEBehg	NaN	None	...	True	False	2026-01-20 19:52:54.593799+00:00	1	1	1	2	1932	None	40
12852	NNUzTpWz3a0PU2aT0000	vitessce_examples/habib17.h5ad	Habib et al., 2017 Nature Methods, h5ad	.h5ad	dataset	AnnData	2.258652e+07	nBetKKNFs4mjJ04X_f4uaA	NaN	None	...	True	False	2026-01-20 19:52:45.252392+00:00	1	1	1	2	1932	None	40
12854	Ljx9cSOxELkGisVt0000	vitessce_examples/habib17.adata.zarr	Habib et al., 2017 Nature Methods, zarr	.zarr	dataset	AnnData	1.060106e+07	YPuOwAd5BZ3pbPoGNBH4aw	208.0	None	...	True	False	2026-01-20 19:53:03.970394+00:00	1	1	1	2	1932	None	40
12762	PigRQD8Yoj4GKBJo0000	vitessce_examples/at3_1m4_01.tif	NaN	.tif	NaN	NaN	3.102020e+05	PQU8IPgfr43-EeVSiHFY9Q	NaN	None	...	True	False	2026-01-14 14:42:53.949834+00:00	1	1	1	2	NaN	None	40
12759	sKPQwWK8muQFXjAp0000	vitessce_examples/Xenium_V1_humanLung_Cancer_F...	NaN	.tif	NaN	NaN	1.190771e+09	37IPIKhuwptPftWMRjKodr	NaN	None	...	True	False	2026-01-14 14:27:37.821779+00:00	1	1	1	2	NaN	None	40
13134	wkRgbeUNJLAPN9Re0000	vitessce_examples/VAN0006-LK-2-85-PAS_register...	PAS OME-TIFF file, Neumann et al., 2020	.tif	dataset	NaN	1.021561e+09	pa3FYqKL6afG8PduprhRJk	NaN	None	...	True	False	2026-01-28 23:32:35.755947+00:00	1	1	1	2	2244	None	40
13135	mPRpRQxVjW5UxKKz0000	vitessce_examples/VAN0006-LK-2-85-PAS_register...	PAS offsets file, Neumann et al., 2020	.json	NaN	NaN	3.600000e+01	5ADv5d7DI5oYVaMOPnhqiw	NaN	None	...	True	False	2026-01-28 23:36:27.657135+00:00	1	1	1	2	2244	None	40
1390	bjH534dxVi1drmLZ0000	visium_aligned_guide_min.zarr	NaN	.zarr	dataset	SpatialData	5.809880e+06	M4MhCm2NH0ZFzcv1cQ8Q9g	133.0	None	...	False	False	2025-03-25 18:18:04.889274+00:00	1	1	1	2	544	None	6
1401	bjH534dxVi1drmLZ0001	visium_aligned_guide_min.zarr	NaN	.zarr	dataset	SpatialData	5.809684e+06	a8rVkf_kjp9To9KI06i03g	133.0	None	...	True	False	2025-03-26 15:15:03.452298+00:00	1	1	1	2	546	None	6
21092	XrsrpoDTl686DsHO0000	trimgalore/WT_REP2_trimmed_2.fastq.gz_trimming...	Output artifact for run 7994	.txt	NaN	NaN	2.945000e+03	Zkks_pMt40x-dkVn1uMacA	NaN	None	...	True	False	2026-04-28 11:02:45.298135+00:00	1	1	1	2	6999	None	54
21091	5pWHP6qrJonnQtzF0000	trimgalore/WT_REP2_trimmed_1.fastq.gz_trimming...	Output artifact for run 7994	.txt	NaN	NaN	2.762000e+03	CwkJVxQFJNeRqT0uj7lGqA	NaN	None	...	True	False	2026-04-28 11:02:41.499010+00:00	1	1	1	2	6999	None	54

20 rows × 22 columns

contains

db.Transform.filter(description__contains="search").to_dataframe().head(5)

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	uid	key	description	kind	source_code	hash	reference	reference_type	version_tag	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	environment_id	plan_id	run_id	created_by_id
id
165	da8MZDFPQ4GB0000	compare_search.ipynb	Benchmark search	notebook	# %% [markdown]\n# # transform.name\n\n# %%\ni...	l4u8p4fKK6zu72DWV6GdiA	None	None	None	True	False	2024-10-30 15:18:00.149553+00:00	1	1	1	None	None	None	3

And case-insensitive:

db.Transform.filter(description__icontains="Search").to_dataframe().head(5)

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	uid	key	description	kind	source_code	hash	reference	reference_type	version_tag	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	environment_id	plan_id	run_id	created_by_id
id
165	da8MZDFPQ4GB0000	compare_search.ipynb	Benchmark search	notebook	# %% [markdown]\n# # transform.name\n\n# %%\ni...	l4u8p4fKK6zu72DWV6GdiA	None	None	None	True	False	2024-10-30 15:18:00.149553+00:00	1	1	1	None	None	None	3

startswith

db.Transform.filter(description__startswith="Query").to_dataframe()

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	uid	key	description	kind	source_code	hash	reference	reference_type	version_tag	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	environment_id	plan_id	run_id	created_by_id
id
262	vQABAtmRLi9I0002	query-parse-bio-10m-pbmcs.ipynb	Query ParseBio 10m PBMCs	notebook	# %% [markdown] vscode={"languageId": "plainte...	VkxM1pp_Ye5uDYSjFpcgXQ	NaN	NaN	None	True	False	2025-01-07 17:34:28.449914+00:00	1	1	1	None	None	None	3
240	vQABAtmRLi9I0001	query-parse-bio-10m-pbmcs.ipynb	Query ParseBio 10m PBMCs	notebook	# %% [markdown] vscode={"languageId": "plainte...	jOa3ISogeUBetQ5bebVMbA	NaN	NaN	None	False	False	2024-12-16 17:58:14.332044+00:00	1	1	1	None	None	None	9
237	vQABAtmRLi9I0000	query-parse-bio-10m-pbmcs.ipynb	Query ParseBio 10m PBMCs	notebook	# %% [markdown] vscode={"languageId": "plainte...	eEmGTrsubPrI_W4hVxTWgA	NaN	NaN	None	False	False	2024-12-16 13:45:14.410851+00:00	1	1	1	None	None	None	9
103	wukchS8V976U0000	facs3	Query & integrate data	notebook	# %% [markdown]\n# ![facs3/4](https://img.shie...	RMBKhscim8vHAar7Apl88A	NaN	NaN	None	True	False	2024-06-07 09:21:17.248660+00:00	1	1	1	None	None	None	2
98	agayZTonayqA0001	scrna3	Query artifacts	notebook	# %% [markdown]\n# ![scrna3/6](https://img.shi...	YKNlgbGXWi5Wy9D6aWhE4Q	NaN	NaN	None	True	False	2024-06-06 13:29:04.132784+00:00	1	1	1	None	None	None	2
32	agayZTonayqA0000	scrna3	Query individual files	notebook	NaN	NaN	https://lamin.ai/docs/scrna3	lamin-usecases	None	False	False	2023-10-04 13:38:27.829843+00:00	1	1	1	None	None	None	2

or

LaminDB uses Django’s Q objects to encapsulate filters for complex boolean logic.

db.Artifact.filter(ln.Q(suffix=".jpg") | ln.Q(suffix=".fastq.gz")).to_dataframe()

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! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
28185	7AffjOdqFRIVgpTZ0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.981608e+06	mmP1JptCPyMLs5sK5sfG3g	None	None	...	True	False	2026-08-03 02:15:14.978778+00:00	1	1	1	42	NaN	None	18
28184	RQzzsn8f04rpVHBQ0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	7.376530e+05	lF1s_gl9HqRjDnUghMEBUA	None	None	...	True	False	2026-08-03 02:15:14.179540+00:00	1	1	1	42	NaN	None	18
28183	hQIafmTUYTCu6U380000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	4.259756e+06	YAoFK35Aq8NbG3yELgfLpQ	None	None	...	True	False	2026-08-03 02:15:13.293893+00:00	1	1	1	42	NaN	None	18
28175	DZ2ZlIMHandyStjk0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.727503e+06	tN8WWL5aSoWSIk9aU1fvLg	None	None	...	True	False	2026-08-03 02:15:09.923273+00:00	1	1	1	42	NaN	None	18
28171	aWk4SGRJG9HbRcHj0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	4.259756e+06	YAoFK35Aq8NbG3yELgfLpQ	None	None	...	True	False	2026-08-03 02:14:55.191667+00:00	1	1	1	42	NaN	None	18
28170	xY5RtGF79GvK6Ems0000	nf-core/test-datasets/scrnaseq/testdata/cellra...	Input artifact at https://raw.githubuserconten...	.fastq.gz	NaN	None	1.727503e+06	tN8WWL5aSoWSIk9aU1fvLg	None	None	...	True	False	2026-08-03 02:14:54.229481+00:00	1	1	1	42	NaN	None	18
27412	WC1CAMYuqRdf3FP30000	test-data/scrnaseq/pbmc8k_S1_L008_R2_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	2.939891e+10	3QmwtB-_YgQk3KzcKo9aKg	None	None	...	True	False	2026-07-23 07:40:52.023603+00:00	1	1	1	63	NaN	None	54
27411	Isd2IJe9wLX3as4v0000	test-data/scrnaseq/pbmc8k_S1_L008_R1_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	7.675472e+09	MdnZwaVvedac8R-Qu-WBLg	None	None	...	True	False	2026-07-23 07:40:50.648530+00:00	1	1	1	63	NaN	None	54
27410	tUURaCPj0LOUe7gh0000	test-data/scrnaseq/pbmc8k_S1_L007_R2_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	2.955347e+10	Te3tftzOgMl5vnmtx3kKvg	None	None	...	True	False	2026-07-23 07:40:49.213511+00:00	1	1	1	63	NaN	None	54
27409	KXEPPbhLhdvNu4ja0000	test-data/scrnaseq/pbmc8k_S1_L007_R1_001.fastq.gz	Input artifact at s3:///ngi-igenomes/test-data...	.fastq.gz	dataset	None	7.725840e+09	iU6K3QJoo5pPp9peYmFedQ	None	None	...	True	False	2026-07-23 07:40:47.659248+00:00	1	1	1	63	NaN	None	54
26631	qGXvU8SFFsQclgR10000	Uploads/iris-0337d20a3b7273aa0ddaa7d6afb57a37a...	NaN	.jpg	NaN	None	1.452900e+04	e0Gct8LodEyQzNwy1glOPA	None	None	...	True	False	2026-07-14 14:51:33.166215+00:00	1	1	1	2	NaN	None	46
23623	siAj6EUthWF8gs2S0000	temp/output/fetchngs/fastq/SRX9315476_SRR12848...	Output artifact for run 8541	.fastq.gz	dataset	None	1.234670e+05	A_WjRYau-c1h9U6yaDGmZQ	None	None	...	True	False	2026-06-01 09:38:35.976330+00:00	1	1	1	59	8541	None	54
23622	F9Tn8DfxnBPGtssK0000	temp/output/fetchngs/fastq/SRX9315476_SRR12848...	Output artifact for run 8541	.fastq.gz	dataset	None	1.315390e+05	l3AcXYhK-NlrqV1yN_O_eQ	None	None	...	True	False	2026-06-01 09:38:31.103701+00:00	1	1	1	59	8541	None	54
23621	FtiwkNxd0Ila7VWx0000	temp/output/fetchngs/fastq/SRX11047067_SRR1470...	Output artifact for run 8541	.fastq.gz	dataset	None	1.500000e+02	eRQN0cs_0cXgLYjgH3w-2g	None	None	...	True	False	2026-06-01 09:38:26.673415+00:00	1	1	1	59	8541	None	54
23620	Xh881SEOzEhkxVBh0000	temp/output/fetchngs/fastq/SRX10940790_SRR1459...	Output artifact for run 8541	.fastq.gz	dataset	None	4.730000e+02	y9MHFf3vRX16okoS8Z7t8g	None	None	...	True	False	2026-06-01 09:38:22.275334+00:00	1	1	1	59	8541	None	54
23619	U4GV6WjzB72LJJNy0000	temp/output/fetchngs/fastq/SRX10940790_SRR1459...	Output artifact for run 8541	.fastq.gz	dataset	None	4.590000e+02	akdizw8fn1VE03NeLgfF0w	None	None	...	True	False	2026-06-01 09:38:18.479607+00:00	1	1	1	59	8541	None	54
23617	1YEM2Tzio0JpaPke0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.149070e+05	WtUUYMbEqFDdN6IG4sRBwQ	None	None	...	True	False	2026-06-01 09:37:53.956200+00:00	1	1	1	59	8541	None	54
23616	8DhYtWgZJO545TJo0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.217050e+05	qXc2e_QdrPTCG8DIIBuLiA	None	None	...	True	False	2026-06-01 09:37:39.002608+00:00	1	1	1	59	8541	None	54
23615	NgZujyEK9KmFMlFK0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.176930e+05	XsiU2GP87-OURwoJJa795A	None	None	...	True	False	2026-06-01 09:37:29.243127+00:00	1	1	1	59	8541	None	54
23614	rLzlXSOpP8o1piIs0000	temp/output/fetchngs/fastq/SRX9504942_SRR13055...	Output artifact for run 8541	.fastq.gz	dataset	None	7.168620e+05	w_NDeTVrKNbaxyEqvBoKBA	None	None	...	True	False	2026-06-01 09:37:24.188066+00:00	1	1	1	59	8541	None	54

20 rows × 22 columns

negate/ unequal

db.Artifact.filter(~ln.Q(suffix=".jpg")).to_dataframe()

Show code cell output Hide code cell output

! truncated query result to limit=20 Artifact objects

	uid	key	description	suffix	kind	otype	size	hash	n_files	n_observations	...	is_latest	is_locked	created_at	branch_id	created_on_id	space_id	storage_id	run_id	schema_id	created_by_id
id
31441	N2N25ecPjU1uhIRN0000	fasta/cytochrome_c_human_aa_frequencies.parquet	Amino-acid composition analysis of human cytoc...	.parquet	dataset	DataFrame	2946.0	arOXbnDIa8lATHRFYegTfQ	None	20.0	...	True	False	2026-09-08 22:10:17.518495+00:00	1	1	1	2	14388	None	76
31438	x7gkzDW9dDIXjMgF0000	fasta/cytochrome_c_human.fasta	Human cytochrome c (CYCS, UniProt P99999) prot...	.fasta	NaN	NaN	183.0	6rYbxRvZr5LftJaBZ3Ltaw	None	NaN	...	True	False	2026-09-08 22:08:58.275001+00:00	1	1	1	2	14387	None	76
31415	W3q98o3Rxv5wxiS40000	NaN	mix-test	.txt	NaN	NaN	62.0	xMtGxadDGhAvlDQKmNJ_ZA	None	NaN	...	True	False	2026-09-08 20:30:51.088739+00:00	1	1	1	2	NaN	None	3
31414	Uu0CthUXD2BP4MMr0000	NaN	upload2	.txt	NaN	NaN	54.0	wzKrXgQvmWqiM4yGu9uEOA	None	NaN	...	True	False	2026-09-08 20:23:51.195724+00:00	1	1	1	2	NaN	None	3
31410	ud8k72RyfgQ1nWYE0000	NaN	check upload	.txt	NaN	NaN	45.0	IHTGvkKqzNPWo5dcubvmvw	None	NaN	...	True	False	2026-09-08 19:41:22.287573+00:00	1	1	1	2	NaN	None	3
31264	g1uMDs0pD0YOqv570000	proteins/favorite_protein.fasta	Human lysozyme C (P61626) sequence in FASTA fo...	.fasta	NaN	NaN	164.0	GAIdBieLvpawYHF9RVeAWA	None	NaN	...	True	False	2026-09-07 06:24:31.330992+00:00	1	1	1	2	14262	None	18
31261	lr9Dzpx1ikjncS6B0000	proteins/protein.fasta	avGFP (P42212) amino acid sequence in FASTA fo...	.fasta	NaN	NaN	310.0	FAicO7EuYVgg-fbnIhS0Dw	None	NaN	...	True	False	2026-09-07 06:23:47.778386+00:00	1	1	1	2	14260	None	18
31259	Vrp32G5NMTMNLA8C0000	NaN	Green fluorescent protein (GFP) sequence	.fasta	NaN	NaN	288.0	fiZX67uu9zP_AECYfjmWgQ	None	NaN	...	True	False	2026-09-07 06:23:14.043343+00:00	1	1	1	2	14258	None	18
30656	Shd8DEzRucu3Xvdc0001	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	34330.0	LyV1nemOxss-GcvMhaTWlA	None	NaN	...	True	False	2026-08-22 18:56:19.059415+00:00	1	1	1	2	13753	None	9
30653	Shd8DEzRucu3Xvdc0000	laminprofiler/duration_vs_time.svg	duration_in_sec vs. time — init	.svg	NaN	NaN	39971.0	BGa0TB6WTWMsss9ppxWUUw	None	NaN	...	False	False	2026-08-22 18:53:54.778547+00:00	1	1	1	2	13751	None	9
30651	L1HGZu8CMlrrxACm0003	laminprofiler/duration_vs_time_import_lamindb_...	duration_in_sec vs. time — init	.svg	NaN	NaN	39971.0	5V2k7GONKqH1vVa73eW-BQ	None	NaN	...	True	False	2026-08-22 18:51:50.828812+00:00	1	1	1	2	13750	None	9
30305	TeERjy0Nt2yY3Cr00000	sheet_exports/Experiments.csv	Export of sheet fNBzuANAusnkFv2p: Our experime...	.csv	dataset	DataFrame	125.0	no__3ZZD0t_AgOMO91saUg	None	3.0	...	True	False	2026-08-20 10:36:31.440148+00:00	1	1	1	2	13478	None	46
29994	fzIkx9MnWq6GVhBj0000	math/powers_of_4_first_10.txt	Text file listing the first 10 powers of 4	.txt	NaN	NaN	110.0	wFhHIH5JbLZS0o0_E0Dx1g	None	NaN	...	True	False	2026-08-17 11:30:32.142793+00:00	1	1	1	2	13237	None	76
29992	Y4MKT5zj0Fzl6swK0000	outputs/powers_of_3.txt	First 10 powers of 3 (3^1 through 3^10)	.txt	NaN	NaN	101.0	fwGZaFBn16u6wbqF-A2TzQ	None	NaN	...	True	False	2026-08-17 11:28:53.844630+00:00	1	1	1	2	13236	None	76
29991	KKfGLmFwvmSb56H50000	NaN	Embedded asset	.png	__easset__	NaN	349552.0	T1sjyK0wVl5t_Ibr1lpqNw	None	NaN	...	True	False	2026-08-17 11:17:07.925399+00:00	1	1	1	2	NaN	None	46
29974	VPpPBvk1EiMoEZJD0000	datasets/math/fib30_workflow/parity.json	Even/odd check of the sum of the first 30 Fibo...	.json	NaN	NaN	40.0	28ZpUqGu3SW9KITScUTJFA	None	NaN	...	True	False	2026-08-17 09:57:07.284293+00:00	1	1	1	2	13225	None	76
29972	R7Hq7dALjxOKQJOX0000	datasets/math/fib30_workflow/sum.json	Sum of the first 30 Fibonacci numbers.	.json	NaN	NaN	20.0	JvZGFprq7qx699-J3O_H5g	None	NaN	...	True	False	2026-08-17 09:56:53.848403+00:00	1	1	1	2	13224	None	76
29970	W6Rs8HwG4l9VtThv0000	datasets/math/fib30_workflow/numbers.json	First 30 Fibonacci numbers.	.json	NaN	NaN	300.0	qQyW0dtcPdhKbcqjqUVG7A	None	NaN	...	True	False	2026-08-17 09:56:37.938618+00:00	1	1	1	2	13223	None	76
29921	iVxey5KAwg69PrSz0000	esc_ipsc/heatmap_top50.png	Clustered heatmap of top-50 DE genes (by padj)...	.png	NaN	NaN	312352.0	IuoQ-te-jQXthkk5Qr0E8w	None	NaN	...	True	False	2026-08-16 10:39:12.555464+00:00	1	1	1	2	13184	None	60
29920	rBcRShqxKX33I33l0000	esc_ipsc/volcano_plot.png	Volcano plot: log2FC vs -log10 padj (ESC vs iPSC)	.png	NaN	NaN	118730.0	XMRsdEIO8ZQ-KjBY1jvlhA	None	NaN	...	True	False	2026-08-16 10:39:10.936477+00:00	1	1	1	2	13184	None	60

20 rows × 22 columns

JSON

db.Run.filter(params__learning_rate__gt=0.01).to_dataframe()

Show code cell output Hide code cell output

	uid	id	name	description	entrypoint	started_at	finished_at	params	extra_data	reference	...	created_at	branch_id	created_on_id	space_id	transform_id	report_id	environment_id	plan_id	created_by_id	initiated_by_run_id

0 rows × 23 columns

Here is an example for querying by parameters: Track parameters & features.